SimpleSearch - Line and FST details


Line specific information

 
Line ID 038G12
Vector Used pAC161
Line Availability available as T3 set from NASC (N403636)
Segregation Analysis 50:35:28
Confirmed for Hit At5g50550
Parent of DUPLO pair none
Parent of pair(s) 69446, 97545
Note

Gene hit At5g50550

 
Sequence (A. th genome BLAST matches underlined) 
>95-K015223-022-038-G12-8409
ACATGATAGCAAATATAGTATTTCTGTTTGGCCCCATAAGTGAGAAGAAAGATAAACTTA
CACTGCAAGAACCTTCCCATCTGCTGAGACATTAAAGGCAGATATAGAGTTGTTTCTTTT
AATAAGCTTTGAACTTCTTCTTCTCCATGATGTTGCATCCCATGTTATAATACTCCCACC
ACGTTCTACACAAAACACATCAAATCTCTCAATTGTTGGCTGACACAACAAGGGTTCTTA
TGTTCTTGCACTGTGAGAATAAATATGAGCTACGAGTGTTCGCAGCAACATAAAGAACTT
CACTGCCTGAATTGTCTACAGACAATCTACACGATGCACCCATCTCGTGCTGCATTCCAA
GCATTCAAACTCTCATCACATCCACTACACCACTAAAGT
GenBank Accession AL763648 [GenBank]
Graphic View Graphic view of gene At5g50550
Predicted Position of Insertion Chr5:20578210 - go to primer design
BLAST e Value 8e-172
Hit Clone Code (BAC ID) MBA10
Hit Gene Code At5g50550 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Transducin/WD40 repeat-like superfamily protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At3g18350

 
Sequence (A. th genome BLAST matches underlined) 
>95-K030267-022-038-G12-8409
TATCTGATCCCGGGGTGTAGTGGCATCATCCTACAAAGTCTAATGATTTCTGTCTCTTGA
CCACTTTCATAATTTGGAGGGGATGGCTTGTTTATGTCTTTGCTCTTGCGTCTCTCTTCT
CTGCCATCTTCATGGTTCTCACAAGATGTTTCAGCAGAGAAAAGCTCATGATCGAGCTGA
AAGTAACTGCTCCTCCTCCAATGAACACAATGGAACAGCTTTTGGCAGTCCAGAACGGGA
TCTCGGAGCTCGAACAGAACATTCAAGACGCAAACATCGTTCTTCTCAAGTTCCGAGCTT
TATTATTCTCGCTTTTCCCTCAGGTCAGCCTTCCCTCTTATATTTAACACAAACTGCTTC
TCCTAAAGCTGTGTCTAACCACAGTTTTGAAACCGCTATTTCAGGCGAGCCAGAAGTTTG
CGATTGCGATTGTGGTCGCAGCGACGATGA
GenBank Accession CR934243 [GenBank]
Graphic View Graphic view of gene At3g18350
Predicted Position of Insertion Chr3:6299852 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) MYF24
Hit Gene Code At3g18350 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation heat-inducible transcription repressor (DUF639)
Insertion Classification CDSi
Confirmation Status failed, line belongs to a contamination group, please check line 162B10


Last Updated on 10.06.2021 13:37