SimpleSearch - Line and FST details


Line specific information

 
Line ID 039B02
Vector Used pAC161
Line Availability available as T3 set from NASC (N403662)
Segregation Analysis 50:23:18
Confirmed for Hit At4g21210
Parent of DUPLO pair 12226
Parent of pair(s) none

Gene hit At4g21210

 
Sequence (A. th genome BLAST matches underlined) 
>01-K035345-022-039-B02C-8409
ATTTCTGCCATTGATGGATCACCTAAAGTGTAGATTACCCTTGCTCCTTCTCTTGCCGCT
TGCTTTATGATCTCCATTAACTTCTCCCCATCTTCAATCTTCAAAAAACCAAATAACCAA
TCAAGTAAACTAACTCAATTCCGGTTTAAGATAACCGGAATCAATTATTCCGGTTCAAGA
AAACAGAAATAATTTCGGTCCGATTCACAACGGCTAAATTGAATTACAGACATTTTCAGC
TGAAATTAGTAGGAATTGTCATTTGGTTGGATTCGGTTTAAAGTTCGATTTCAACAATTA
AGGAAATTTAAATTGTAAACCGAATTCATTCCCGTTTGGTTTGGTTTAGTAAAAA
GenBank Accession HG968627 [GenBank]
Graphic View Graphic view of gene At4g21210
Predicted Position of Insertion Chr4:11307865 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) F7J7
Hit Gene Code At4g21210 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation PPDK regulatory protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit HG968627 [GenBank]

Gene hit At3g04470

 
Sequence (A. th genome BLAST matches underlined) 
>10-K030268-022-039-B02-8409
ACACTGATAGTTTAAACCGAAGGCGGGAAACGACAATCTGATCCCCGGGTATGGGATCCT
CCCGATAGTGAGTCGTATTACTCATCCCCATTTGGATCCCCCCCTGCAGACCTCACTTCA
CAACCTGCTTCATGTGATGGTGAGTGTCAAATCTAGACGGGTTCCCGGTGCAATGACTGA
TGAAGACCTCTTTGCGGTTGATGAACATCGAACTGCTGTAACAAATGGTGCAAAGACCGA
CGGCTTTGAAGACGTATGGGATCCTCCCTATANTGAG
GenBank Accession CR934262 [GenBank]
Graphic View Graphic view of gene At3g04470
Predicted Position of Insertion Chr3:1191052 - go to primer design
BLAST e Value 1e-58
Hit Clone Code (BAC ID) T27C4
Hit Gene Code At3g04470 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Ankyrin repeat family protein
Insertion Classification CDSi
Confirmation Status unknown


Last Updated on 10.06.2021 13:37