SimpleSearch - Line and FST details
Line specific information
| Line ID | 039D05 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N403689) |
| Segregation Analysis | 50:8:7 |
| Confirmed for Hit | At3g12460 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | none |
Gene hit At3g12460
| Sequence (A. th genome BLAST matches underlined) | >50-K118834-0022-039-D05C-35St CTTCGCAGACCCTTCCTCTATTAAGGAAGTTCATTTCATTTGGAGAGGACAGGGTACCCG GGGATCAGATTGGTAATTACTCTTTCTTTCATGTTTTGTTTCTTTTCAATTTGGTAATTA CTCTTTCTTTCTTCTCCTTTTGCAATCGTCGGAGGCTAGTTAAATTGTAGTACTGGTGCT CGCTATCACCATTGATCTTTTTGAAAATAAATGCAGTTAAATTTGGACGGTTGAGATGCA GTGTGACGTCATTAACCTACGCCAAACCTTAATGGTTATTACTGATTTGAATTCAAAAAG AATTTCTTATAAAGATCTCGAAATTTGAATTATGGAGAATATTTTGAGTATAGTTTATCA GATTACGTTAGCTAATGTTATATACTCCTAAAAATTAGTATTATCCTAAATCAAGATTAG GATTGATAAACGCATCTCAGTTGTAAACTCGTATCCTTGATCTTGCTTGAGGTTATATCC AGTTTAAAAATCGGAAATCATTTAACTGGGTGCAAAAACATTTGATTGACCAATTTGGTA CGTCGTGATTTTTTTTGTCCCATGTCAAATTAAACAAAATTGATAATATAATTCATCAAA GCGTATTTGTTTTTAATCAAAACGTTAGATAGTCTTTTAATATCAATGCCTTTATTACAA ACGTAGTCTACATGTACTAATTTTCCAGTCAACATTCATAGTCACAAAATACGATAACAT GAAAACTTTCATGAATTAGAAGAAGACGTTGATTGATAAAGAGAGAAGAACAACAACAAA TTCAAATCACAAGATTAGCAGCAACTTTTAA |
| GenBank Accession | HG968629 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:3955468 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | T2E22 |
| Hit Gene Code | At3g12460 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Polynucleotidyl transferase, ribonuclease H-like superfamily protein |
| Insertion Classification | TS2TE (5') |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | AL763685 [GenBank] |
Gene hit At3g00840
| Sequence (A. th genome BLAST matches underlined) | >36-K030268-022-039-D05-8409 AGCCATTTACATTGAATATATCCTGATCACCGGGTATTTGCATCCGCCCGACGCATGAGC CGTACTAATCTTTGAGAATGGGAGCCTCCCGAGAATGAGCCCCATTCCTTGATGAAACCC ACCCTAATCGGAAGCAATACATCCTTCGGTAATTGAGCTGCCATATTTTGCTAATCTCTG ATGTCTGATTCTGGGGGAGGTCTCGAGCTCCCATATGAAACGATGCATCCATGTGTACCA CCGGAACTCGATGAATATTGGTTATTTGAGATCCACCCACTAAAGAGAAGACTCGTTACT TAAGTTAAATGATAGTGACATGATTAAGAGAATATTAGCTATTAGGTCGGAAATAAGAGA AATAAGACTGGTAGTGGTATGGTTATGTAAATTATCAGTATGGGATCCTCCCTATAGTGA GGACCGGGG |
| GenBank Accession | CR934287 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:18006036 - go to primer design |
| BLAST e Value | 3e-59 |
| Hit Clone Code (BAC ID) | T8P19 |
| Hit Gene Code | At3g00840 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | novel transcribed region |
| Insertion Classification | TS2TE |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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