SimpleSearch - Line and FST details


Line specific information

 
Line ID 039E09
Vector Used pAC161
Line Availability available as T3 set from NASC (N403705)
Segregation Analysis 50:42:34
Confirmed for Hit At4g23460
Parent of DUPLO pair none
Parent of pair(s) 12900
Note

Gene hit At4g23460

 
Sequence (A. th genome BLAST matches underlined) 
>69-K015216-022-039-E09-8409
NTGATCCATGGTAGATTTCCCGGACATGAAGCACTTTACAATTGAATATACATGGCTTCA
ATTGAATATTTAGAATCATGACCGCCATTCAAAATATTCTAATTCAGCTCTTCCTTGAGC
TCAGGGATCTCTCCCTTCTTCGTAGTCGAAAAATATTTAGAATCATGACCGCTCATTTTC
TCCCTTCTTCAACCTCCACACTTCTTCTCCTCCGAGACGATCAGTGACAAGAGACACAAA
GACACGAAATTGCAAAAAGTAATAGGTCGGGGTTAAAATAAAACTAATTACAGTTTAACC
CTATGGGATCCT
GenBank Accession AL763702 [GenBank]
Graphic View Graphic view of gene At4g23460
Predicted Position of Insertion Chr4:12248781 - go to primer design
BLAST e Value 6e-111
Hit Clone Code (BAC ID) F16G20
Hit Gene Code At4g23460 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Adaptin family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At1g63990

 
Sequence (A. th genome BLAST matches underlined) 
>69-K030253-022-039-E09-8409
CCCGGACATGAGCCATTACATTGAATATATCCTGAGAGTTAAACCGAAGGCGGGAAACGA
CAATCTGAGCCCCGGGTATGGGAGCCTCCCTATAGTGAGTCGTATTACTCGTCTTCAAAA
ACCCAGAAAATCACGAATTCGAGAAAGCTATAACGCGATCTAAGAAACGGACTTAAGCAC
GAGATTAAGTAGTATGGGATCCTCCCTATAGTGAGTCGTATTACTCACTCTCTTTTAANA
TTACCGCTGCGGACATCGCAGCGGACATCTAGATTAAAAAATTGAAGATGCTCTTTCTTT
TTCTCAATGTTGTTCA
GenBank Accession CR934300 [GenBank]
Graphic View Graphic view of gene At1g63990
Predicted Position of Insertion Chr1:23744926 - go to primer design
BLAST e Value 3e-40
Hit Clone Code (BAC ID) F22C12
Hit Gene Code At1g63990 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation sporulation 11-2
Insertion Classification CDSi
Confirmation Status failed
Other FSTs Supporting this Hit CR934300 [GenBank]


Last Updated on 10.06.2021 13:37