SimpleSearch - Line and FST details
Line specific information
| Line ID | 039F11 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N403719) |
| Segregation Analysis | 50:36:33 |
| Confirmed for Hit | At5g66320 |
| Parent of DUPLO pair | 11743 |
| Parent of pair(s) | 5879, 5965, 5998, 10450, 10452, 78492, 78518, 78652, 78832, 78852, 78880, 78881, 78883, 78885, 78886 |
Gene hit At1g63750
| Sequence (A. th genome BLAST matches underlined) | >86-K030268-022-039-F11-8409 GGATAAAGAAGCGAACATGATCAATAAGATTGCAAGGAATGTTTCATATAAACTTAATGC TACACCATCAAAGGATTTTGAAGATATGATGGGACTAGAAGCTCACTTGAAGAAAATCCA GTCTTTGTTACGTTTAGATTATAAGGATGAAGCTCTGATAATTGGAATCTCTGGTCCTGC GGGCATTGGTAAGAGTATGGGATCCTCCCTATAGTGAGACATATTACTCTC |
| GenBank Accession | CR934317 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr1:23652222 - go to primer design |
| BLAST e Value | 1e-100 |
| Hit Clone Code (BAC ID) | F24D7 |
| Hit Gene Code | At1g63750 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Disease resistance protein (TIR-NBS-LRR class) family |
| Insertion Classification | TS2TE (5') |
| Confirmation Status | unknown |
Gene hit At5g66320
| Sequence (A. th genome BLAST matches underlined) | >86-K015224-022-039-F11-8409 NTGATCCATGTAGCATTTCCCGGACATTGAAGCCTTTACAATTGATCAGCTTGGTCCCCA CAAGCTGTACCAAGTTTTTGAAGAAATAGGGCCTTAATTAGAGCAGAGATTTAGGATCCG AACCGGTTCAGTTGTTAGCCCCAAGTTAGTTTCTCATTGACTTGTTTCTTTGTATATTAC TTTCATTATTTTTAGCATTTACTTTTTTTTTGTTACAGTAGTTTGATTTTTCATGCTATG GGATCCTCCCT |
| GenBank Accession | AL763721 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr5:26496235 - go to primer design |
| BLAST e Value | 4e-84 |
| Hit Clone Code (BAC ID) | K1L20 |
| Hit Gene Code | At5g66320 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | GATA transcription factor 5 |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At3g13205
| Sequence (A. th genome BLAST matches underlined) | >86-K015216-022-039-F11-8409 NTGATCCATGTAGATTNTCCCGGACATGAAAGCCTTTACAATTGAATATATTCAATTAGC CCTACAATTGAATTGAATATTGGCCTACAATTGATCCATGTAGAGCTGTATCAAGTTCAA AATCAATAAATACCAAGTTAATAAATCACGTTAAGGTTAAGGAAAAAGAGGAATGCAGCT TAATCATCATATCACAAGACATGGATAATCCAAGTTTCCATAATTTTTGTATTAAGTTTT GGGCCTTTGAGGCCCATTAACAACATTATATTTAATGCGTATGTCACGCTGTGTTCAAAA TCCTTTTTCTTCCCTCTTTTCCAAAATCAAAACGCGATTTCATGGCCTCCGGCAAAGATT CCGATCGTAACCTATGGGATC |
| GenBank Accession | AL763720 [GenBank] |
| Graphic View |
|
| Predicted Position of Insertion | Chr3:4244638 - go to primer design |
| BLAST e Value | 1e-152 |
| Hit Clone Code (BAC ID) | MJG19 |
| Hit Gene Code | At3g13205 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | |
| Insertion Classification | CDSi |
| Confirmation Status | unknown |
|
Last Updated on 10.06.2021 13:37 |
gabi-kat.de 
