SimpleSearch - Line and FST details


Line specific information

 
Line ID 040B01
Vector Used pAC161
Line Availability available as T3 set from NASC (N403757)
Segregation Analysis 50:47:34
Confirmed for Hit At5g46130
Parent of DUPLO pair none
Parent of pair(s) 67816, 96794
Note

Gene hit At1g54390

 
Sequence (A. th genome BLAST matches underlined) 
>02-K030269-022-040-B01-8409
TGTGGACAAGTAACGGGACGGAAGCATTTACAATGGAATATATCCTGAGAGACCCGCACG
GATATCTCCGATAGAGAATCGGTGGCGTGTCGAGGAGATACCCCCCGGGTCGGCTTGAGA
AAGAATGTGTTCAGCTCCAATGTCAAGAATATGATGCCCACACTGACTATGCGATCCTCC
CTATAGTGAGTGCCATCAGGTCCTGAATACTTAAATTTTGCGGTATCAGTATAGGGAGGA
TCCCGGTCGCACTATACAGGAGGATCTTAGACCCAGGAGCAAGGACGGGGTACTGCACAC
AGCATGGCGAGCGACAAGCAAATTGNAAACCGGATCACCCGAGAATCAAGATTAGGTTAA
GGACCCGGATGCCGTTATAATAGTTAGGTCTTAATGTATAGCTGTTATGATGAACCCTTT
TGTTCCTGTTTCGACAGGGCCAAAGAGGTGAAGGGGTTCCACGAAGGCAGAGCATCGGCC
GCAAGACGAGAGCAAAAGCTC
GenBank Accession CR934361 [GenBank]
Graphic View Graphic view of gene At1g54390
Predicted Position of Insertion Chr1:20305554 - go to primer design
BLAST e Value 7e-20
Hit Clone Code (BAC ID) F20D21
Hit Gene Code At1g54390 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation PHD finger protein-like protein
Insertion Classification CDSi
Confirmation Status failed, line belongs to a contamination group, please check line 166D07
Other FSTs Supporting this Hit CR934361 [GenBank]

Gene hit At5g46130

 
Sequence (A. th genome BLAST matches underlined) 
>02-K015218-022-040-B01-8409
CTGATCCATGTAGATTGTCCCGGACATGAAGCACTTTGATCGCGTTACTCCACTTTGATT
CAATCCCATACTCATTGCCTCGCAGACTTCTCCAGCCAAAAACTTGCTCTTAATTATGAT
TTCGTTTTCACCCTCTGATCCGGACCTCCTATGGGATCCTCCCTATAGTGAGAAGATNNN
GGACAGTGTACGGGAGGCAGACGATGAGAGAGAGAGCTGGCAAAGGATAGGGATAATAAG
GGGATGCTCGATAGGCAGAGAGACTTACGGTGGTATGGGATCCGAAACTACGCAAGGGCA
TGAGTGCAGGAGCCGAGACTGACAGGTCAAGTACTGGAACAAAGAGCAAGAGAACTACGG
TATAATTCCTGGAGGCGAGGGGATGAGCTCATGTGGTCTCAACTGCAAAGAGAAAGACGA
GCCCACGGATCATAGGGATGACAAAAAAGATGTGCCTCAGTATATGTTGTAGGAGGTGGA
GGAGATGAATTCGTTTACCAGGACAGACCA
GenBank Accession AL763749 [GenBank]
Graphic View Graphic view of gene At5g46130
Predicted Position of Insertion Chr5:18704009 - go to primer design
BLAST e Value 4e-50
Hit Clone Code (BAC ID) MCL19
Hit Gene Code At5g46130 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation hypothetical protein (DUF295)
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit AL763750 [GenBank] AL763749 [GenBank]


Last Updated on 10.06.2021 13:37