SimpleSearch - Line and FST details
Line specific information
| Line ID | 040B02 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N403758) |
| Segregation Analysis | 50:46:40 |
| Confirmed for Hit | At1g15280 |
| Parent of DUPLO pair | 2354 |
| Parent of pair(s) | none |
| Note | |
Gene hit At1g15280
| Sequence (A. th genome BLAST matches underlined) | >10-K015218-022-040-B02-8409 TAACCACTAGTGGACAGACAAGATTATGTTCCTAAAGCTGTCGTCACGAGGGAGAGGACC CAGGAAATCCGACACTCACCCTGAGAGAATGAAAATCATAGCACATTCTGATCCCAAGTC ATAACAGTGAGTTCTTAAAAAAAAAATCCCCTATGGGATCCTCCCTATAGGGAGATAACC AGAGCCATGAGCTTATTATCCTATGGGATCCTCCCTATAGTGA |
| GenBank Accession | AL763752 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:5253634 - go to primer design |
| BLAST e Value | 5e-25 |
| Hit Clone Code (BAC ID) | F9L1 |
| Hit Gene Code | At1g15280 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | CASC3/Barentsz eIF4AIII binding protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | CR934362 [GenBank] AL763752 [GenBank] |
Gene hit At5g46130
| Sequence (A. th genome BLAST matches underlined) | >10-K015225-022-040-B02-8409 GCCTCGCAGACATCCGCAGCCAAAAACTTGCTCGTACCCATGATATAGAAATCACCCTCT GATCCGGACCTTCTATGGGATCCTCCCTATAGTGAGAAGAACAACAAAAAGCAAAAACCA AA |
| GenBank Accession | AL763753 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:18704004 - go to primer design |
| BLAST e Value | 7e-06 |
| Hit Clone Code (BAC ID) | MCL19 |
| Hit Gene Code | At5g46130 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | hypothetical protein (DUF295) |
| Insertion Classification | CDSi |
| Confirmation Status | failed, line belongs to a contamination group, please check line 040B01 |
Gene hit At4g37880
| Sequence (A. th genome BLAST matches underlined) | >10-K030269-022-040-B02-8409 ATAGTGAGATCCATTACCCATCGACTATGCGATAAATCATATCGCCACGTTTGCACATAG CTGCCTCCCGGAGATCCAGAAGCTCATGTGTTCTCTCTTATGGAACAAAAAACTCGATAA ATCACCATACTCCGAGTTTCTCTCCCCCGCTCTGTGGAACAATGCATTCAAAGAGCTAAC CCGACAGTATGGGATCCTCCCTATAGTGAG |
| GenBank Accession | CR934363 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr4:17810627 - go to primer design |
| BLAST e Value | 1e-79 |
| Hit Clone Code (BAC ID) | T28I19 |
| Hit Gene Code | At4g37880 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | LisH/CRA/RING-U-box domains-containing protein |
| Insertion Classification | CDSi |
| Confirmation Status | failed |
|
Last Updated on 10.06.2021 13:37 |
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