SimpleSearch - Line and FST details


Line specific information

 
Line ID 040C05
Vector Used pAC161
Line Availability available as T3 set from NASC (N403773)
Segregation Analysis 100:72:50
Confirmed for Hit T12G13
Parent of DUPLO pair none
Parent of pair(s) none
Note

Gene hit T12G13

 
Sequence (A. th genome BLAST matches underlined) 
>64-K028183-022-040-C05t-8409
AGCCATTTACAATTGAATATATCCTGCCTGCTATCCTCAGCGATCTGAGTAGAAATGTCT
GGATGGACTGCTGACCTGACTGCCTCCTTCTCTGCTATTGGCGATCGAGTATGTTGGTGG
AAGTGTGACTTTCTGTTCTGTTTTTCCTCTTTCTGAGCACCAATAGCTCCAAAACACCTG
AAACAACTCCAGAATGCAGAATGTATGCAAGACTAGTCCTACACTCGACTAAAGATGCAA
AATGTATGGGATCCTCCCTATAGTGAGTCGTATTACTCACTCCCTTTTT
GenBank Accession CR769997 [GenBank]
Graphic View Graphic view of sequence CR769997 of line 040C05
Predicted Position of Insertion Chr4:5180444 - go to primer design
BLAST e Value 6e-104
Hit Clone Code (BAC ID) T12G13
Insertion Classification Genome Hit
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At2g26510

 
Sequence (A. th genome BLAST matches underlined) 
>35-K015218-022-040-C05-8409
TTACAGTGTCTCATTATAAACGATACTGAAAGAACATACGCCAACGATACTCCCATAATG
GCCGGAACGCTTGTACACGATCAACCTCTGTACACAACGTGTTTATGCCCCACCTAAACA
ATATAGTCCTCCATAACCCCGCTTTATCACCCTATTATCCTTCAAAATACCAACCGGGCC
CATTTCAGAATGATATAATAACAT
GenBank Accession AL763761 [GenBank]
Graphic View Graphic view of gene At2g26510
Predicted Position of Insertion Chr2:11275329 - go to primer design
BLAST e Value 3e-20
Hit Clone Code (BAC ID) T9J22
Hit Gene Code At2g26510 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Xanthine/uracil permease family protein
Insertion Classification CDSi
Confirmation Status failed


Last Updated on 10.06.2021 13:37