SimpleSearch - Line and FST details
Line specific information
| Line ID | 040H12 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N403840) |
| Segregation Analysis | 50:48:39 |
| Confirmed for Hit | At5g07690 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 6967, 9675 |
Gene hit F28G4
| Sequence (A. th genome BLAST matches underlined) | >96-K030254-022-040-H12-8409 AGCCATTTACAATTGAGTATGTCCTGGAATCCCATGTGTATGGAGATGCCTACTTATACA GAGTGCGAGTTAAACCACTATCAGATCCCCGGGTATGATATCCTCCCTATAGAGAGTCAT AATACTTTTCCCTTGAGGAACCGGAAGAGGAAATTATATTGGTTTACATGTATGGGATCC TCCCTATAGTGAGTCCTATTACTCCCACCCNNGGGGGGGGNGNNNNNNNNAAANNNNNGN ANNANCCCNNNNNGAGGGNNNNGGAGAGNAGAAANNANAAGAAGAGGGNGGGGAAAAGGA GAGGAGAACGGGAAAAAAGAGGGGGGGGNGCCAGGGGAGAGAGGCGAAAGGAAAGGAAAA AAAGAAAGCAGAAAACGAGGGAAAAACAAGGAAGCGGAGGAGAGAGGGGGAAGTGGAGAA GGAGAAGGGTGGGGGAATAAAGACGGGAAGGAGGAATAAACGAAGGAAGAGCAGATAGAG AGGAGTAAAAGAGGAAAGATGATGATG |
| GenBank Accession | CR934486 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:5945262 - go to primer design |
| BLAST e Value | 6e-14 |
| Hit Clone Code (BAC ID) | F28G4 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
Gene hit At5g59390
| Sequence (A. th genome BLAST matches underlined) | >96-K030269-022-040-H12-8409 AGGATCGATAAGCCACCCTTTCACGGTTCGTATTCGTATGGGATCCTCCCTATAGTGAGA CTACTTACTCATTTTTTAATTTGTCCATCAAATCAGCAAGTTTGAAACTTATCTTCAACA TCACATCTGTTGCTTCCTCCATCGTCGCCTTTCGGTTTTCCTCATAGTTCCAAAGCTCTA AAATCACATANCTGCCACTAGCGTTATGTTCCTCAATCTCTAGTTTTGTTCTTACCACTT CATTATAAACTTCTTCACCGTATGGGATCCTCCCTATAGTGAGANNNANTA |
| GenBank Accession | CR934487 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr5:23957229 - go to primer design |
| BLAST e Value | 2e-84 |
| Hit Clone Code (BAC ID) | F2O15 |
| Hit Gene Code | At5g59390 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | XH/XS domain-containing protein |
| Insertion Classification | 3' region |
| Confirmation Status | unknown |
Gene hit At5g07690
| Sequence (A. th genome BLAST matches underlined) | >96-K028725-022-040-H12-8409 CCTTTTGCCTATGACTCAAACCCGGATGANCGATCGCNATCGGGTTCCATCTCTCCGAAG TCTCTTCCTCCTTCAAGCTCCAGAAGTGTATGGGATCCGGGGGGGGGGGA |
| GenBank Accession | CR934485 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:2447552 - go to primer design |
| BLAST e Value | 3e-28 |
| Hit Clone Code (BAC ID) | MBK20 |
| Hit Gene Code | At5g07690 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | myb domain protein 29 |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At5g41500
| Sequence (A. th genome BLAST matches underlined) | >96-K015218-022-040-H12-8409 ATATATGCAACTATCACTTCGAGTGATGATAGCTATTATCGAACCTGAAGCCCACCATAG GCCCTGCTTAATTGGTTTACGGTTGTTGGCATCGATAATTGTAGTATGCTTCGCCTTACC GGTAAGACGAAATTGCATGAACTAAAAGATATGGTCGTGAGATGACCCTGCCATGGCCTC TTCGATCTCTAATGGTTCGATGGACGGGAAATATGAAATGCTTACTATGGAATCCTACCT TAGGTGATGGAGAAAAAGATAGAGTAATTACCAATTTTTTTTCAATTCAAAAATGTAGAT GTCCGCA |
| GenBank Accession | FR801168 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr5:16603706 - go to primer design |
| BLAST e Value | 1e-07 |
| Hit Clone Code (BAC ID) | MYC6 |
| Hit Gene Code | At5g41500 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | F-box and associated interaction domains-containing protein |
| Insertion Classification | 5' region |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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