SimpleSearch - Line and FST details
Line specific information
| Line ID | 041B01 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N403853) |
| Segregation Analysis | 100:70:65 |
| Confirmed for Hit | At5g10860 |
| Parent of DUPLO pair | 11915 |
| Parent of pair(s) | none |
| Note | |
Gene hit At3g18930
| Sequence (A. th genome BLAST matches underlined) | >02-K030576-022-041-B01-8409 AATATTCAACACTGATAGTTTAAACCGAAGGCGGGAAACGACAATCTGATCCCCGGGTAT GGGATCCTCCCTATAGTGAGTCGTATTACTCACTGCCTTTTGCGACCTCCGCTGCGGACA TCTCTATCATCACCACCGTTTAAATTTCATCTTACATCTCTGCCCTACACGTGTCTCTTC TTCTCCATCTCTCCGGCGATAACAGTGCCTCTGGATCTCCGCATCTTAACCGGCTCGATG AGTGCGGTGCTGTTCNGANAAACATCGGACTCGTCATCGATTTCGTTCGCCGCGATGAGC TTCCCGTCGCTGGAATCCGTTCGGAAAACGGGNAAANCCCGCCCGCGGAAGAACNCCCGC GGAAGAACGGAGGATTCGGGCNTCCGGAAGAGCGAGACGGAACCAGCTTGGAGGTGGAAA GAGAGACCCGAACCGGAGTTAAATTCAGGAGGGGGAAAGACGCGCNAGAAGCATAGGGGT GCCGCAGCGGGCGCGTGAGGTGAAAAGGGAAGAAGGAGCGGGGAGAAGTGAAGA |
| GenBank Accession | CT025995 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:6523981 - go to primer design |
| BLAST e Value | 2e-97 |
| Hit Clone Code (BAC ID) | K13E13 |
| Hit Gene Code | At3g18930 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | RING/U-box superfamily protein |
| Insertion Classification | TS2TE (3') |
| Confirmation Status | failed, line belongs to a contamination group, please check line 170A04 |
Gene hit At2g05810
| Sequence (A. th genome BLAST matches underlined) | >72-K028183-022-041-B01t-8409 TTTGAAGAATCCGAATGAGCCATTTAAATTGAATATATCCTGAAACCTCCTCGGATTCCA TTGATAGTTTAAACCGAAGGCGGGAAACGACAATCTGATCCCCGGGTATGGGATCCTCCC TATAGTGAGTCGTATTACTCACTTTCTTTTACTATTAACGCTGCCGACATCTATGCTAAC CTGTACTGAATAATCCTTATCTTGTTGCTCTCTCTGCTCCAAGGAACCGGGGCACCAATC TTGTGTTGCTCTTCCCATCTCTCATCAACTCCTTCCGATTCGATCTCCCGTCCGAGATAT CACTTAGACGACTCAGACAGTACTATATGTATACGGATTTAACAACATCATAAACTGTGT CATCAATAGAATGAGGACCTCCCTAGAGGGGGTGGAATTAGGAGNTANGTTGAGAGAGGA GAGGAAGGAATNANNTTGGGAGAGAGANTGGGGGGGGGGGNTGAGAAANGGAAGGAGNAA NANGAGGANNNTNGGTATTTAAGAATAAGGATAGGGGAAGGGAGGGTAGGTGGNGAGGAA GAGATGAGTTATAGAGTANTAGAGTTAAGAAGAAAGAGAAAGGAGAGAGTGATTATNGGG GGACNATGGGGGGGTAGGAGATAAGGGGGAAAGAAAGAAGA |
| GenBank Accession | FR801179 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr2:2215288 - go to primer design |
| BLAST e Value | 7e-08 |
| Hit Clone Code (BAC ID) | T17C22 |
| Hit Gene Code | At2g05810 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | ARM repeat superfamily protein |
| Insertion Classification | CDSi |
| Confirmation Status | failed, line belongs to a contamination group, please check line 141A10 |
| Other FSTs Supporting this Hit | FR801179 [GenBank] |
Gene hit At5g10860
| Sequence (A. th genome BLAST matches underlined) | >72-K028184-022-041-B01t-8409 AGCCATTTACAATTGAATATATCCTGTATGCCGCCTCGGATTCCATTGATAGTTTAAACC GAATGCGGAAAACGACAATCTGATCCCCGGTGTACGAAATCCGTACCCTAACATAACACA AAACACTCCAAAAAAATTATTAATGATTATATCTAATTTTACCTCTCTCTGTAATGATAC CAGCAAGAGCTTGTTGCTCACCAGGTTTCACAACCACCAAGGCACCAACATTGTGTTGTG TCATCTAAACAAAATCAAACACAATCAATTCCAAATCCACATCGAGATATCTAAAAAAGG AAAAAGAGAGTAGTATAAGCATACGGATTTAACAGCATCATAAACAGTGTCATCAGTAGT ATGGGATCCTCCCTATAGTGAGTCNTATTACTCACTCTCTTTT |
| GenBank Accession | CR769999 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:3429593 - go to primer design |
| BLAST e Value | 1e-98 |
| Hit Clone Code (BAC ID) | T30N20 |
| Hit Gene Code | At5g10860 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Cystathionine beta-synthase (CBS) family protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At2g34590
| Sequence (A. th genome BLAST matches underlined) | >02-K015226-022-041-B01-8409 TGATCCATGTAGATTTCCCGGACTGAAGCACTTTACAAATGTCTCCAACTTTTGTTGATT AGGATGATCTCCCTTGCACAATGATCTTCCGTAGATAATCTATGGGATCCTCCCTATAGT GAGACGGTTATGAAACTTCAGATGCTATGGGATCCTACCTATAGTGAGACGCAGGAGAGC CCGCCTATGGCTACAGAAATACAAAGCCCCATCAAAGATCCATTGTCAATTGTTAATGCG ATATCAAAAACTAAGATTTATCTAATACCGAAACAGCACTTGGCATCAACGGCTCATAGC GACGAGCTACGAGGCTATGGGATCCTCCCTATAGTGAGTACTTTATCGCAATGATGGCAT ACATCTCAGCCACCTATATTATCCACTATCATCACCAGAAAGTGACAGACAGCTCCGCAA TGGAATCCGAGGAGGTTTCCAGATATTACCCTCTGCCGAAAAGCCCCAATCCGCCCCTAG GCCTTATGAAACCGCCTATCCGAAATATTCGGAGTAGAACAGCGGACCGAGCTCTACCAT GCGGACGAAGA |
| GenBank Accession | AL763817 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr2:14570338 - go to primer design |
| BLAST e Value | 6e-37 |
| Hit Clone Code (BAC ID) | T31E10 |
| Hit Gene Code | At2g34590 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Transketolase family protein |
| Insertion Classification | CDSi |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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