SimpleSearch - Line and FST details
Line specific information
| Line ID | 042C03 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N403963) |
| Segregation Analysis | 100:98:92 |
| Confirmed for Hit | At2g46680 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | none |
Gene hit At3g05690
| Sequence (A. th genome BLAST matches underlined) | >19-K015512-022-042-C03-8409 TTTACAATTGAATTATTCTTGGCGGTGCTCTGTTTTTTTTTTATAATTTTCTACTTTATT GGGAGTGGGAAATATAAAGGTAAAACAACTAAAAATAATGGGTCGGGTTTTTAACTATAG CGTGGGCTTGACGGGCTTTGTTTTAAAAAGCTACAAGGATCCCACTTAAATCCATTTTTA TTTCATTTTGGATTTTGGATATTTTTCCACTAGGGGATCCTCCCTATAGGGAGANNNNNN CCNNNNTNNTTCNNTTTTTTTTTTTTGATATTTATNCACAAGGGGCCCCCCCCTATAGAG AGANNNCNNCCTNTCCCNACCCAATTCTCTAACAAAACACCATCTGGGGTGGTTTAAACG TCCCCTCGCGCCCCCCGCGGGAGAGGCCCCCCCCCCACGCTCCCATCAAACAGCCCCAAC CCCTTCTACGTCGCGTGCCGCAAACCGCCCCCCGCCGGGCCCGGATTCCCCGACACATCC CTACCCCGTTCGCCCCACCCCGCCTTGTCCCCGCCTTCTCCCCGCCATCGCCCGGGGCGC ACGCACAAATGTGTAGGCGGGGGGGGCGCAACCCGCCGCCGGGTCCGTTTTGCTCCCGTG TTGTAAATGAGGGCACCCCAGCGCGCTGGCCCCGCCCTCCCCCCCCTTCCCTTAACCACC CCCAGCCCCCTCCCCCCCCGATCCCCCCCCTCCGCGCGATCGGGGAGGGTGTCACCCCGC ATTACCCTGCCCCCCTGTCCGCCCCCCCCCCCCCCCTATCCTCGTGCCGGCTCCCCCCCC CCTCCCCTCGTCGTTCCCCCCCCATGCCTGTCCCATTTCAATTCTGTCAC |
| GenBank Accession | AL763884 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:1679033 - go to primer design |
| BLAST e Value | 6e-46 |
| Hit Clone Code (BAC ID) | F18C1 |
| Hit Gene Code | At3g05690 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | nuclear factor Y, subunit A2 |
| Insertion Classification | TS2TE (5') |
| Confirmation Status | unknown |
Gene hit At2g46680
| Sequence (A. th genome BLAST matches underlined) | >19-K015500-022-042-C03-8409 AATTTGATCACTGTAGCTTTCCTGGAGCATGAAGCCTTTACAATTGAATATATTCTGGGC GGGGCTTAGTGAGTGATGCCAAAATCCGCCCTATTGGTACCTGGCGACCCAAAGGTCGAT TACTCAAAAATGAATGGAAAGGTACGATAAAGCAAACCCAGAGTGATATCTTATTATATG CTAAGGAGCCCTGCCACAAAAGAACAACATATCACTTTTTTATATAACTGTTAACATAAT ACTCTCAGGCGTATCACACACATATATAGATAGCCAACATCACACAAACATAGAGATTCC AAAAAATAAAAATAAAGAAAACATAAATCCTCTGAGGAAAAATTCCGATGAGATGACAGA AGGTGGAGAATATTCTCCGGCGATGATGTCAGCAGAGCCATTCTTGACCATGAAGAAGAT GAAGAAGAGCAACCACAACAAGAACAATCAGAGAAGGTTTAGCGACGAGCAGATCAAGTC ACTGGAGATGATGTTTGAGTCTGAGACAAGGCTTGAGCCAAGGAAGAAGGTTCAATTAGC TATGGGATCCT |
| GenBank Accession | AL763883 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr2:19167067 - go to primer design |
| BLAST e Value | 1e-108 |
| Hit Clone Code (BAC ID) | T3A4 |
| Hit Gene Code | At2g46680 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | homeobox 7 |
| Insertion Classification | Promoter |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
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Last Updated on 10.06.2021 13:37 |
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