SimpleSearch - Line and FST details
Line specific information
| Line ID | 044E09 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N404185) |
| Segregation Analysis | 50:49:48 |
| Confirmed for Hit | At1g27480 At1g12560 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 6503, 6505, 6518, 6521, 7828, 90619, 90667, 90669, 90670, 90672, 90673, 90674, 90676, 90677, 90678, 90679, 90680, 90681 |
Gene hit At1g27480
| Sequence (A. th genome BLAST matches underlined) | >69-K026601-022-044-E09-8409 GNAGCCATTTACAATTGAATATATCCTGTCTTCCACTCGGACATGAAGTTGGGTATGGGA TCCTCCCTATAGGTGAGAGCCTCTACATGATTACGCGGCGTTCCATATCCACCATATACT ACTTATCTTAAGCCTTACGTTTTAAGATACTACTCTGTTTTTCAAATTCAATGGACCTTT TTCTTCAAATCTCCAGCTTTCTGCATAGATCCATGACCATGAGAGTCTGTTTCTTAGAAC GAAAATGAAAAAAATATCTTCACATTATTCGGTAGTCATAGCGATACTCGTTGTGGTGAC GATGACCTCGATGTGTCAAGCTGTGGGTAGCAACGTGTATGGGATCCTCCCTATAGTGAG |
| GenBank Accession | CR396017 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:9544404 - go to primer design |
| BLAST e Value | 7e-128 |
| Hit Clone Code (BAC ID) | F17L21 |
| Hit Gene Code | At1g27480 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | alpha/beta-Hydrolases superfamily protein |
| Insertion Classification | Promoter |
| Confirmation Status | confirmed, show confirmation sequences |
| Other FSTs Supporting this Hit | CR396016 [GenBank] |
Gene hit At1g12560
| Sequence (A. th genome BLAST matches underlined) | >69-K026600-022-044-E09-8409 GNAGCCATTTACATTGAATATATCCTGCATTTACCACTTGAAATGTCTTGGAGATAGGAT ATGCAACTCGATGAGCCGACGTTTCCAGACATATATATCCACACGATTAACAAAAAAAAA AAGTTTATGAAAAAAGTTTCCAAAAAATTTTACCAGGGATACTAAGTCCAAAGCAATTTT TCTTTTGCATTGCAGGGGCTTTGAACCGAAGGGGACCCCCCCAAAGGGGGGATCTTANAA CGAAAATGAAAAAAATATCTTCACATTATTCGGTAGTCATAGCGATACTCGTTGTGGTGA CGATGACCTCGATGTGTCAAGCTGTGGGTAGCAACGCGTATGGGATCCTCCCTATAGTGA G |
| GenBank Accession | CR396016 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr1:4276737 - go to primer design |
| BLAST e Value | 1e-11 |
| Hit Clone Code (BAC ID) | F5O11 |
| Hit Gene Code | At1g12560 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | expansin A7 |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit MLN21
| Sequence (A. th genome BLAST matches underlined) | >69-K015474-022-044-E09-8409 NTGATCCATGTAGACTTTCCCGGACCATGAAGCCTTTACAATTGAATACTATCCTGTATA AAATTGTAAATATATTCAATAGTAAAGCCTTTTCCTTTATATAATACCATCTTAAAAAAA ATATTTTATATTTCCAATCAATTATTGAAGTTATCAAATTATTAGCTATGGGATCCTCCC TATAGTGAG |
| GenBank Accession | AL763954 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:4800936 - go to primer design |
| BLAST e Value | 8e-24 |
| Hit Clone Code (BAC ID) | MLN21 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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