SimpleSearch - Line and FST details


Line specific information

 
Line ID 044F02
Vector Used pAC161
Line Availability available as T3 set from NASC (N404190)
Segregation Analysis 50:47:43
Confirmed for Hit At4g13990
Parent of DUPLO pair none
Parent of pair(s) 3687, 66733

Gene hit F23E13

 
Sequence (A. th genome BLAST matches underlined) 
>14-K015474-022-044-F02-8409
NTGATCCATGGTAGATTTCCCGGACATGAAGCACTTTACAATTGAATATTAATAACCAAC
AAAATTTTATATATTTGGTTTCAATCATCTAATAAATTAGCCTTGACAACTCACTGGGTT
TGCCCTAAATTTGTCACTGTCTTAACTTTGCCTCTCCATGACAATAGTCTGTCGTGAAGA
GACTACTACTTACCCGTTTATTATTATTTTTTCTACGTTTTTTACATACATAGCTATATA
TTCTGTTTCAGCCAGATGTAAAGTTTTTTCCTCGAATTGATGAAACCAGGTGCAATGTAT
CTGTAGATTTCATAGATAGAAAATGGACATTGTCGTTATCCTTTTAACAGATTAAAGAAC
TTCGAAATGATTAAAAACGAGGGAGCTATGGGATCCTCCTAAANNNGGGAGANNNNNNNN
NNNGNANCACCCCCCANTCCATCAACTCATGAGACGAATAGGCTCTCACCGTATTGTAAG
AAACCCCAAAGATACCTACTCATATCAAGACCTGCGTAAAACGGCACGANAACCGCAGAC
GCTA
GenBank Accession AL763957 [GenBank]
Graphic View Graphic view of sequence AL763957 of line 044F02
Predicted Position of Insertion Chr4:17134768 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) F23E13
Insertion Classification Genome Hit
Confirmation Status unknown

Gene hit At4g13990

 
Sequence (A. th genome BLAST matches underlined) 
>14-K026600-022-044-F02-8409
GNAGCCATTTAAATTGAATATATCCTGATAGACTGTTAGCTATGGTTAATGCTGAATTGC
TGCACCCCCTGATCTCTGCTGATGACGGAGTTCCTTAGATTCCGGNGCTTGTACCATCCG
CCACAGGTGAAAATCATTCTCTCGTTTTCCAGAGCTCGATATCCTCCTGCCACTCCCTGA
TCTCCTCCGCTGATCTTGGATGGAAACAAGTCTGATACCCACTATCGTATTCATTCTTCC
AAGAACTCGATTCGATGGACAACATCTACATGTTCCGCGACTCGGGTAAGAACCGAAGCT
TGCTTCCCCAATCAGATTCGTTATCAGTCTGTCTCCTGAAATCCCAAGCAATCCTTCCTG
AAACCAAGAAATGGTCTCTACCAGACATTCGACCCCACTCTTTCCGTATGGGATCCTCCC
TATAGTGAGANNNNGGNNNNNNNNNNNNNNNNNNNNNNNNCTATGGGATCCTCCCTATAG
TGAG
GenBank Accession CR396021 [GenBank]
Graphic View Graphic view of gene At4g13990
Predicted Position of Insertion Chr4:8085424 - go to primer design
BLAST e Value 3e-105
Hit Clone Code (BAC ID) FCAALL
Hit Gene Code At4g13990 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Exostosin family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit CR396021 [GenBank]


Last Updated on 10.06.2021 13:37