SimpleSearch - Line and FST details


Line specific information

 
Line ID 047C08
Vector Used pAC161
Line Availability available as T3 set from NASC (N404448)
Segregation Analysis 50:26:24
Confirmed for Hit At3g28130
Parent of DUPLO pair none
Parent of pair(s) 84785, 84792, 84797, 84798, 84799, 84800, 84801, 84802
Note

Gene hit At4g29170

 
Sequence (A. th genome BLAST matches underlined) 
>59-K016076-022-047-C08-8409
AGAGAAGAAACAATGAATTTCGCTATGCTCACAGTAATATGGAAGCTTTTTGATCGTCTC
TCTAGATACAGAACGGCGACTCAATTGATTGCCTACACAGATGGGAAGGCTCCTGAAGTA
GCATCTTCTTTTGCAAAATAATGAACACCGTCAAACAACATATAACACAGACAAAGACTA
TATGGCAACAAATGAGATGAATATATCCAACTATAAGAACACCAAGCTACTCACAGAAAT
TACCAATCTTGATCTTTCCCGACAAGATCATCATCGACTAAACTCTGGATAACATCTTTC
ATCAGACTGACTACTTACACCCTTCTTCGACCCCATCTTCTCAAGTTCCATTAGCTGAAA
TTTTTNTACAAAAGTAGAGACCCATAAGTGCTTGTATCACAAACCCAAAAGTTCAATAGC
AACAAATTTAGGCAGTATATGCACTTCACGACTCTATGGGATCCTCCCAATAGTGAGAAG
CTCCACCCCGGTGACTTCCCTTTTCTTCTTGCCATTCAAACAGAAGAAACCCTGCAAGGA
AATGAACACCAAGCTTTACGGAGAGGTATGATAGGCCCTCTAATTGAATCCTCGACTCAC
CGAGGAAAAGGGGATCCTCTA
GenBank Accession AL936265 [GenBank]
Graphic View Graphic view of gene At4g29170
Predicted Position of Insertion Chr4:14384159 - go to primer design
BLAST e Value 2e-157
Hit Clone Code (BAC ID) F19B15
Hit Gene Code At4g29170 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Mnd1 family protein
Insertion Classification CDSi
Confirmation Status failed

Gene hit At3g28130

 
Sequence (A. th genome BLAST matches underlined) 
>59-K016081-022-047-C08-8409
TGTCCTGTAGTTTCCCGGACATGAAGCCATTTACAATCCGAGCATATGGATCATTCATTT
TGACTTACATTAGTTTGCATAGTTGTTGGGGTACGTAAATTTTAATATTTTAGAAAACTT
AATTATATCTTAAACTTCTTTTCAATACTATAGCTATTTTTCGCAGGGAATATTTAATCC
AGGATATTACGCGATTCATCTGTGGGCAGTACGTAATAAAGGACCTGTTTACTTAGCTAT
ATTCAGACCTTTATCGATTTTAATAGCAGTGATTATGGGAGCGATTTTTCTTGGAGATTC
TTTTTACCTATGGGATCCTCCCTATAGTGAGANNANANGGNGNGNANACNCGNGNNCCTT
GGNAGAGAACTACCACAAGCGCGCCAACTA
GenBank Accession AL936266 [GenBank]
Graphic View Graphic view of gene At3g28130
Predicted Position of Insertion Chr3:10468180 - go to primer design
BLAST e Value 1e-151
Hit Clone Code (BAC ID) MMG15
Hit Gene Code At3g28130 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation nodulin MtN21 /EamA-like transporter family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37