SimpleSearch - Line and FST details


Line specific information

 
Line ID 048G11
Vector Used pAC161
Line Availability available as T3 set from NASC (N404595)
Segregation Analysis 50:47:35
Confirmed for Hit At5g53990
Parent of DUPLO pair none
Parent of pair(s) 5252, 5268, 5282, 5291, 8641, 8663, 10353, 10970, 94027, 94028

Gene hit At3g42052

 
Sequence (A. th genome BLAST matches underlined) 
>87-K016077-022-048-G11-8409
TATCCTGAAATTTCCCGGACTGAAGCCATTTACAATCTACATGAAACTTTGCAGAATATA
GACAACGATACAAATCTTGAATGAAACAATTTCATTATAAAGAAAATATGTCACAAATAA
GGTAAAATAAGGAACTATGCGATACTCCCTACTATTAGCGGGCCATCTGTGGACGGACAT
GCCGTTAAGTTTTGCTTCGTGGAATTAACTGCCTACACACTGCTAAGAAGCCGTGTATGG
CACCCTCCCTATGTTAAGACTATTCAATCTCGCATTCGATCATTGAATGCAGGTAATTCC
TCTGGAGTTCGAAGAACTATCTTCGGTTCCCCAAATTCCCTTCCGCGAAATGCAGCAAGT
GATCAAACGACCCTGGATGGTACAAACGCGGACATCCATCCGAAAGATGGAGAAACACAT
CCCGAAGACGACAACCAGTTCGTTCATCAACACGAGCAAGAAGACTTCAACCAGTTCGAG
ACCATGAGAGAAGTAAGCCGGGAACTGATAGAAATGAGGTCATAATTCCACCAAGCTACA
AGCTCGGAACCCGGATATCACCCGGGTCATTGAAGAAGCTATGGGATCCCCCCCATATGT
GGAGAACCCCCCGCCCCGGCGCACGCCACAGCACCATCAAACGCCCTCCTATATCTCATC
CATGATGGACACACCGAACCAGCACACCCCTCCCCACTTTTCCCCTTTTCCCCCACCACT
CCCACTCTTGACCACCCCCCCCCGCACCACATACCAATAATGACCAAAAAAAGCCACCCC
CACACACTACCTACAGTCAGAAACAAACCCACAGACGCCCCACAAAACAACCCCCCGAGC
ACCCCCATTTTCCCCTGGCATACTTACCCTAATATAGCCCCACCAGGCCTGCCTCGTACA
TAAAATCCGTTAAAACCG
GenBank Accession AL936412 [GenBank]
Graphic View Graphic view of gene At3g42052
Predicted Position of Insertion Chr3:14235560 - go to primer design
BLAST e Value 2e-163
Hit Clone Code (BAC ID) F4M19
Hit Gene Code At3g42052 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation  
Insertion Classification TS2TE
Confirmation Status unknown

Gene hit At5g53990

 
Sequence (A. th genome BLAST matches underlined) 
>59-K029745-022-048-G11C-8409
GCCATTTACAATTGAAACCGGTTAATAATCCAGGACTAACCAAAACCTCCTTTAATTTAG
CGTGGTTCCTCCTCACCAGATTCCCTAACTCACTATCTTTGTCCATCACCGAGGTGATCG
CAACACTTAAGCTCTCTTTCGAGAACCATCCTGTTTCTTCTCTTTTCACTTCCACCGAAA
CCTCGAGTTCCTCACTCATCAATCTAGTGTTGAGAATTTGATCACACAAATATGGAAGCA
AGACTATTTGACAATCACTCACTAGAGACTCCCACATTGATCCAAACCCACAATGGGTCA
CAAAGCAGCCTACTGATGGATGAGCCAATATCAATGGTTGCTGCACCCATTCTCCCCAAA
CTACTCCATGATTCTTCACCCTCTCCTCAAACCCTTCTGGCAACGCTTCTTGGATCGTCT
TTGCGCCTTTTGGTGGTTTTACCGCTACGAGAAACGGTAAACCAGTGAGCTCCATTCCTA
AACAGAGTTCTT
GenBank Accession HG968645 [GenBank]
Graphic View Graphic view of gene At5g53990
Predicted Position of Insertion Chr5:21915766 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) K19P17
Hit Gene Code At5g53990 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation UDP-Glycosyltransferase superfamily protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit AL936413 [GenBank]


Last Updated on 10.06.2021 13:37