SimpleSearch - Line and FST details


Line specific information

 
Line ID 049C12
Vector Used pAC161
Line Availability available as T3 set from NASC (N404644)
Segregation Analysis 50:24:19
Confirmed for Hit At3g49940
Parent of DUPLO pair none
Parent of pair(s) 2972, 2984

Gene hit At3g49940

 
Sequence (A. th genome BLAST matches underlined) 
>91-K013871-022-049-C12-8409
CTGGAGATCTGCTAATCTATGGAACGGTGCCTATGGATTGTTGTGGACGGGGAATTGGAA
TGTTTGTCAAGCGGCGGTTGAGACGGTGCTTCATGGAGGTTCTTTAAAACCAATACCGTA
GCTTCTTAACGGCGGAGGATTCGCCGGGTTTCCGTCTCCTACTTTCTACGAAGCTTCGGA
GATCTGTACGGAAATGTTGAATCTACGAAAAGCTGATGATCCCGGCGATCGGAACATTTA
TCATCACTGCCGATTCTCAAGCCCTATGGGATCCTCCCTATACCGAGACCCCGGCATCCC
CCCTCCCCATCTCCCTTGCCCAACGCTCCACCCGTCCATTCCCCCGTCTTCCCCCCCCTT
TCAACCCCCCCCTTCGCTAGTCCCAATCAACTAATACATTATCCCCCATCTTTTTTGCCC
ACCCGCACACCGTGTCCCATACGCCGATCCCCCTTTTCCCTTTCCCCCCCATTAGCGATC
CGCCCGAGATGTAACCCGATGTGGTCCCCCAACCCCCCCCTCCCTCCCCCTTTCCCCCCC
CCCCACTTTCTTTTTTTGCGCGGCGCGGCCCCCCCGCGCCCCGGCCCGGGGNGCTTCTCT
TTCGTTCCCCTATTATTATATATATCGTCCGTCGTATTACTGATAANNANNCCCAGTCCC
CCTTTCGCCTCTCGCCCTTTCCCCTTCCCCGGCCCCGTGGATCCACCATTCCCACGCCCT
TGCCCTCATCATACCACTTCCCACCAACCCGGCCGCCCCTTTCGTCCCCGTTCGCGTCCG
ACCACTCAATTAGTTTCACTACGCCGCACCAACCACTTTTTAAATATTAC
GenBank Accession AL764113 [GenBank]
Graphic View Graphic view of gene At3g49940
Predicted Position of Insertion Chr3:18514730 - go to primer design
BLAST e Value 9e-107
Hit Clone Code (BAC ID) F3A4
Hit Gene Code At3g49940 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation LOB domain-containing protein 38
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37