SimpleSearch - Line and FST details


Line specific information

 
Line ID 049H07
Vector Used pAC161
Line Availability available as T3 set from NASC (N404699)
Segregation Analysis 100:88:66
Confirmed for Hit At4g36870
Parent of DUPLO pair 12572
Parent of pair(s) none

Gene hit At4g36870

 
Sequence (A. th genome BLAST matches underlined) 
>56-K013870-022-049-H07-8409
AAAATTGATCCATGATAGACCTTCCCTGGACATGAAGCCTTTACAATTGAATATAACCTG
AAATTTACTTTCCCGACTCACTCTCTACATTGATAAGCCTATTACCACACAAATACGAAA
ACAGACAAATACATCTACATCGTTTTGATCTGCGTGAACATTCGTACATNAGAGTGACTC
GAGTATGCATGTGCTAAACATATACTGGAACCAAGGAATCCTTTTTATTGCATGAAACAA
TTACGATTAATTATGTAATTGGCGTTTCCTTCTCCATATAAGCTACTCTCCAGATACGTT
CTAAAGCTAACCCTTGACGTTACTCATCAGTTTACCCACACACGAATTATCTACTTTTTA
GTTGACCTTGCTTTCTTCTCGCCATGCGATCCTCCCTATACCGAGCCCTCCACCCCCCCC
CCCTCTTATAATTTATATAACTGCCGGCCCGGAGAATCCCGTGATATAAAAACCACCGGC
CGCCCCCGCAAAAAAATATTTTTGTCCGCCCGAACAAACACAAACCCAAT
GenBank Accession AL753412 [GenBank]
Graphic View Graphic view of gene At4g36870
Predicted Position of Insertion Chr4:17370954 - go to primer design
BLAST e Value 7e-52
Hit Clone Code (BAC ID) AP22
Hit Gene Code At4g36870 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation BEL1-like homeodomain 2
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit AL753412 [GenBank]

Gene hit F28H19

 
Sequence (A. th genome BLAST matches underlined) 
>56-K013871-022-049-H07-8409
TTGTTGGTGATTCATACATTTCTCATTTAAACGTACTCGTACCTATGGGATCCTCCCTAT
AGTGAGACTATGGGAACCTCCCTACTATGAGCCTAAAGGAATGTCCATAAACTAAGGCAT
CTGAGGGAGCTGCATTCTTGGAGAGGAAAACAAATGCGAAAATACCAAGCCTTTTTTTTT
AAGTGCACCAAGACCACCAAGGCGAGGACCTACGCAGCCGACGAGCCCACATACGCGAAT
GGGTACCGGGGCCACATAAGCGCAGACACATGACGAAGGCAGACCACCGACTAATGACCT
GenBank Accession AL753413 [GenBank]
Graphic View Graphic view of sequence AL753413 of line 049H07
Predicted Position of Insertion Chr1:16637340 - go to primer design
BLAST e Value 8e-21
Hit Clone Code (BAC ID) F28H19
Insertion Classification Genome Hit
Confirmation Status unknown


Last Updated on 10.06.2021 13:37