SimpleSearch - Line and FST details
Line specific information
| Line ID | 050C07 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N404735) |
| Segregation Analysis | 50:44:21 |
| Confirmed for Hit | At2g20270 |
| Parent of DUPLO pair | 12481 |
| Parent of pair(s) | none |
Gene hit At2g20270
| Sequence (A. th genome BLAST matches underlined) | >51-K012138-022-050-C7-8409 NTGATCCATGTAGCATTTCCCGGACATGAANGCCTTTACAATTGCCTAATGTCTCAACGT TTTGACTGGTATGAAATCAATTCTTGCTTCCAACTTCTTCTTGTTTATCTTCATCGGTAT CATTTGGCTGCTTGCTTGAAATGGTTTGAATGCATATATGATTTTATAATGACGGAAGAA TGATAATGGTTATGGGCTGCTATAAACTACTCTCAAATAATAAAATCTCACATTGTCAGA GATGAATTATTATATACTATGTTTTTTTCTTACATTAAAAATTGATTGCTTTGTAGTATT AAACTAAATAGTAATGGTTAGACAGAACATCAAACTTCAAACATTTTGGTGTAATTTCTG TTGTCTGGTTTTTTTATTAGGGAGCCATACATACTTTTTTGGTTTTAATTTATGAAGGTC GATACATAATTATTTATTTAGTCTAAACTACTACATAAATAAAAGGATTAGCTTTAGCTA TGGGATCCTCCCTATAGTGAGTCGANTTACTC |
| GenBank Accession | AL753439 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr2:8739030 - go to primer design |
| BLAST e Value | 1e-16 |
| Hit Clone Code (BAC ID) | F11A3 |
| Hit Gene Code | At2g20270 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Thioredoxin superfamily protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit F5O11
| Sequence (A. th genome BLAST matches underlined) | >51-K012138-022-050-C7-8409 NTGATCCATGTAGCATTTCCCGGACATGAANGCCTTTACAATTGCCTAATGTCTCAACGT TTTGACTGGTATGAAATCAATTCTTGCTTCCAACTTCTTCTTGTTTATCTTCATCGGTAT CATTTGGCTGCTTGCTTGAAATGGTTTGAATGCATATATGATTTTATAATGACGGAAGAA TGATAATGGTTATGGGCTGCTATAAACTACTCTCAAATAATAAAATCTCACATTGTCAGA GATGAATTATTATATACTATGTTTTTTTCTTACATTAAAAATTGATTGCTTTGTAGTATT AAACTAAATAGTAATGGTTAGACAGAACATCAAACTTCAAACATTTTGGTGTAATTTCTG TTGTCTGGTTTTTTTATTAGGGAGCCATACATACTTTTTTGGTTTTAATTTATGAAGGTC GATACATAATTATTTATTTAGTCTAAACTACTACATAAATAAAAGGATTAGCTTTAGCTA TGGGATCCTCCCTATAGTGAGTCGANTTACTC |
| GenBank Accession | AL753439 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:4266893 - go to primer design |
| BLAST e Value | 1e-136 |
| Hit Clone Code (BAC ID) | F5O11 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
Gene hit T7A14
| Sequence (A. th genome BLAST matches underlined) | >51-K012185-022-050-C07-35St TTGACGAAGGGATGACGCACAATCCACTATCCTTCGAAGACCCTTCCTCTATATAAGGAA GTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGCTGTTTCCCGCCTTCA CTTCAATATCTATCACGAGACTGACATACCATATACGCACATGTATTAATTACAGTGATG ATTTCTTCTTAGTCTCTTGTGCAACCCAATTCTAGCGGTCCAACAAATCAGTGAAACTAA AGCTATGGGATCCTCCATATGGTGATACGTTTTAACTCAGAAATACACCATCAATGCGCA TGTACATAACTCTAATTTCATTTTAAAATCACAGGAATTCCATTTTTATACAGAGTCCAA AATTCATACTTTATAAAAACCCTTTCCACATACATTACCTTAATCTATGGGATCCTCCCT ATATGAGC |
| GenBank Accession | AL753440 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr1:1422773 - go to primer design |
| BLAST e Value | 3e-66 |
| Hit Clone Code (BAC ID) | T7A14 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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