SimpleSearch - Line and FST details
Line specific information
| Line ID | 051G05 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N404877) |
| Segregation Analysis | 50:26:24 |
| Confirmed for Hit | At4g17430 At5g49980 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 85483, 85484, 85486, 85487, 85488 |
Gene hit At1g69460
| Sequence (A. th genome BLAST matches underlined) | >39-K012139-022-051-G5-8409 TTGATCCATGGTAGATTTCCCGGACATTGAAGCCTTTACAAGTGATTGAGTTAAGCCATT TACTCATCGGACTTGACCATCTTGAATATATTTACACAACAAGTATAGAAACGGAGCAAA GAAATATCGCAGATTTGTCGGTTTGCTTCTTCCTGTTTGGCCATGGACGTGGGCTTGGTC TACTGGGATTGAAGAAGTTGATCATGTTTTTTGATCTGATGATGTACTCACCATCATTGC GATGCAGATATGGGATCCTCCCTATCGGGAGTAATCTTACTCGAGCGTACTAATCCGGAC CTTTAGACTGAGGGATTACACTATCATCATTTATAATCGTAGTCTGGCGCAGAAACAGGA TTGATGCCTCTTCTGTGCAAACGAGACTGGAGAGAACGCTCGACCACTCCATTTTTGTGT TAATGCACCGGATCAAGTCTTGACTGTATTTTTCCATGCAACCACTTTGCGGCAGAGCCT ATAAGCGATATCTTCCTAATACCACACAATAGAGAAAGAAAAGTACCTATCTCTAAGATA ATACATCTGTTCATGAATCGAGTTAACAGTATCAAGAGGACTCTTTACTTCAAATTCCAT AACCTGCCACAAAGATGCTTAACAGCAACCCACCTGGAGGATCACCATAATAACCACCCC CTTTGGGATCCTCCCTATAGCGAGTCGTTTTA |
| GenBank Accession | AL753563 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:26111803 - go to primer design |
| BLAST e Value | 2e-64 |
| Hit Clone Code (BAC ID) | F10D13 |
| Hit Gene Code | At1g69460 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | emp24/gp25L/p24 family/GOLD family protein |
| Insertion Classification | TS2TE (3') |
| Confirmation Status | unknown |
Gene hit At4g17430
| Sequence (A. th genome BLAST matches underlined) | >39-K012139-022-051-G5-8409 TTGATCCATGGTAGATTTCCCGGACATTGAAGCCTTTACAAGTGATTGAGTTAAGCCATT TACTCATCGGACTTGACCATCTTGAATATATTTACACAACAAGTATAGAAACGGAGCAAA GAAATATCGCAGATTTGTCGGTTTGCTTCTTCCTGTTTGGCCATGGACGTGGGCTTGGTC TACTGGGATTGAAGAAGTTGATCATGTTTTTTGATCTGATGATGTACTCACCATCATTGC GATGCAGATATGGGATCCTCCCTATCGGGAGTAATCTTACTCGAGCGTACTAATCCGGAC CTTTAGACTGAGGGATTACACTATCATCATTTATAATCGTAGTCTGGCGCAGAAACAGGA TTGATGCCTCTTCTGTGCAAACGAGACTGGAGAGAACGCTCGACCACTCCATTTTTGTGT TAATGCACCGGATCAAGTCTTGACTGTATTTTTCCATGCAACCACTTTGCGGCAGAGCCT ATAAGCGATATCTTCCTAATACCACACAATAGAGAAAGAAAAGTACCTATCTCTAAGATA ATACATCTGTTCATGAATCGAGTTAACAGTATCAAGAGGACTCTTTACTTCAAATTCCAT AACCTGCCACAAAGATGCTTAACAGCAACCCACCTGGAGGATCACCATAATAACCACCCC CTTTGGGATCCTCCCTATAGCGAGTCGTTTTA |
| GenBank Accession | AL753563 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr4:9726655 - go to primer design |
| BLAST e Value | 2e-61 |
| Hit Clone Code (BAC ID) | FCAALL |
| Hit Gene Code | At4g17430 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | O-fucosyltransferase family protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At5g49980
| Sequence (A. th genome BLAST matches underlined) | >39-K012184-022-051-G05-35St TTGCGTAAGGGATGACGCACAATCCACTATCCTTCGAAGACCCTTCCTCTATATAAGGAA GTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCGCCTTCG GTTTAAACTATCAGTGAACTACCCTGAACTACAGTTATGCTACACATTTGTCCTGACGTG GACACTCCCAGCATACTCAATTGCCACAAACTACATGACGTTTCAGAGGATGAATCCCTC GTGATCTATGTCTGCATGGCTTGAATACGTTACTATGTGACTTAACTCTATGGGATACTC CATATAGAGACGTCTATGACTAACCTCCCTATAGTGAGTCGTNTTTACTC |
| GenBank Accession | FR801364 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr5:20335423 - go to primer design |
| BLAST e Value | 4e-10 |
| Hit Clone Code (BAC ID) | K9P8 |
| Hit Gene Code | At5g49980 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | auxin F-box protein 5 |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
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Last Updated on 10.06.2021 13:37 |
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