SimpleSearch - Line and FST details
Line specific information
| Line ID | 052D02 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N404934) |
| Segregation Analysis | 50:43:41 |
| Confirmed for Hit | At5g09860 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 4009, 4040, 9910, 9937, 81680, 81695 |
Gene hit At1g07260
| Sequence (A. th genome BLAST matches underlined) | >12-K012482-022-052-D02-8409 TGATCCATGTAGATTTCCCGTACTGAGGCACTCAACTGCCGTAGGTCAACAGGATACTTA TCTGTGATCTCAACCCAAGACCTAGTAGGACTCTCTCACGAATAGACCTGGAGGCTAAAC CTTCGTAGGCACAGGACAGACAGCTATCCAGGAATTGGATGTTCTACCTTGGCGGAGCTT AAACCGTAGAGGCATCTGAATAAGCTAGCAGTCTTGACTTTATAACAATGGCATCACTTA GACTTTGATCCAAAGCCTAATTATACGGCTGAAACATTACCTATGGTATCAATGGTCTGA TTCACATTCTTATAACAGACCAGCTCTCGTGGATCACAACTGTCTGCATTGGTGTCCCAC TATATAACCTATGGGATCCTCCCTGATCGTAGGTGCTCTCATGATCGATTTTGGGGCATA CTACCTTTGTGTATTTGAATGAACATGGGATAGCATTAATTTCAAGCGTGTACGCTTTAT TCCATAATAGCCGCTCAGCCTACGAGAGCACACTTTTGGATGACTTTTCCCGCAATTATC ATTTGGAGTCTACGTAGCGTATTCTACACTCGATGGCTCCGATAAAAATTCTACAGTAGC GCTCGTTACAGNTTTCAACCCTATCATGGCTATTGCCACCGCTCAATCTCCTATGAGAAA CCTATCATTTGGTGACGGAATGTAAGCCGAAACCGGATGCATCTTGGCTTCCCCCACCAA TTTTATCAATACCAACGGTTGCCTCAATTGAGGGGGCAATTACTCTATAAATGGGTACCA GGGGACTTTCCAAAAGCACCAAGATCATCCCCCTCTGACAGGCACACTACCTGGTTAACA GAAAATAAAACTCAA |
| GenBank Accession | FR801456 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:2228542 - go to primer design |
| BLAST e Value | 5e-22 |
| Hit Clone Code (BAC ID) | F10K1 |
| Hit Gene Code | At1g07260 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | UDP-glucosyl transferase 71C3 |
| Insertion Classification | CDSi |
| Confirmation Status | unknown |
| Other FSTs Supporting this Hit | FR801457 [GenBank] FR801456 [GenBank] |
Gene hit At5g14340
| Sequence (A. th genome BLAST matches underlined) | >12-K012303-022-052-D02-8409 NTGATCCATGGTAGATTTCCCGGACATGAATGCACTTACAGTTGAATATGAAGAATATAC TCAAGTGTGTAACCAATGTAAAATAAATAGGACTCACATGTCTTAGAAAGATAGTTGACT ATGACTTAAAAGGAACATGACTCAACACATATTGGATCTAAATAGAGCTATACGGTGTTA CGTTCGAGAGAGATTTCATATGAAAAAGCTATGGGATCCTCCCTATAGTGANNNNNNNNN NNNNNNNNNN |
| GenBank Accession | FR801455 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr5:4623926 - go to primer design |
| BLAST e Value | 2e-40 |
| Hit Clone Code (BAC ID) | F18O22 |
| Hit Gene Code | At5g14340 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | myb domain protein 40 |
| Insertion Classification | CDSi |
| Confirmation Status | unknown |
Gene hit At5g09860
| Sequence (A. th genome BLAST matches underlined) | >12-K012486-022-052-D02-35St NACTTGCGTAAGGGATGACGCATTNTCCCCTATCCTTCGCAGACCCTTCCTCTATATAAG GAAGTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCGCCT TCGGTTTAAACTACGCCTGAGGAACAGCAAAGACTCGGTGGTTCTGATACAGAAAACGGT CAAGAGGCCGGTCAAATCGAAGACGGAGAGACAGAAGAAGCTGGTCTGATGGACACTGAT CTTGATCATCCTCCTATGCCCGTCTCATGAATACGCTTTCAGTTTGTCGACCCTTTCTTC AATGGGGAATCCTTTGGATATGAAGTTCAAAAGTATTGATGTTTAACAAATTATGTTAAA AGGTATTTTCTAAATATGTTTGTATGAGTGCAAATCTGCTATGGGATCCTC |
| GenBank Accession | AL753685 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:3070594 - go to primer design |
| BLAST e Value | 2e-151 |
| Hit Clone Code (BAC ID) | MYH9 |
| Hit Gene Code | At5g09860 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | nuclear matrix protein-like protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | FR801454 [GenBank] FR801454 [GenBank] AL753683 [GenBank] AL753686 [GenBank] |
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Last Updated on 10.06.2021 13:37 |
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