SimpleSearch - Line and FST details
Line specific information
| Line ID | 052D04 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N404936) |
| Segregation Analysis | 50:47:39 |
| Confirmed for Hit | At5g65080 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | none |
| Note | |
Gene hit At3g57630
| Sequence (A. th genome BLAST matches underlined) | >28-K012486-022-052-D04-35St TGACGTAAGGGATGACGCACAATCCCCTATCCTTCGCAGACCCTTCCTCTATATAAGGAA GTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCGCCTTCG GTTTAAACTATCATCGACCCACAGACTATATCAGGCGTACTTATTCGAGGACACAATACC GAATATTAGAATATTTTGTACTAAAAGAGAGGCGTAACCTTGTATGATCGAGTCCTCATT CGCCTGTGCATGCCATCCGCAGGGGCCCGGTCGGCATTGCTAGTCATAACGCGCGAATAT GACTTATGATGAAACGACCGCACCACTGTGGGCCTAACATCTGTACGGCATCCAGGATAT ATACCTAGCTTGAGCCGAATACCATATGGTACACTCCTTATCTCCTGAATTTGAATTGAA AGATAACTTTGCCTCTTCTTTGTCTCTTTTGATTTTGAAGATGGCATTCTACGAGAACAT CTTGGCCACCGCTCATCGTACAATGAATGGAGAAGAGGCAGATTTCTTCTTTGTTCCTGT TCTGGATTCATGCATTATAAATCGTGCTGATGATGCACCTCACAATAACATGCAGGTTGG GTCGAGAAACTCACCTTTTGATTCTCTGCTTGTAGAAGCTTTAGAGCTCATATATTGGAT ATGGTTTTATTACTTTCAGAATCATACTGGNATTAGAAGCTCACTTACCTTAGAGTTCTA CCAAAAGGCTTATGAACACATTTGTGAGAAATATCCATACTGGAACCCGCTCAACTGGAA GAGACCATATTTTGGTATGATGATGCATACCTACCTAAAGCTTGGTTCTGGATTCCTTAC CAGAACACCTCCCACTAAGTGGCTAATCTTTTTACCCTGAAAAAGCAGTTTTTCTCATGG GATGAGGTGCTTGCTATGCTCCTAAGAGATATGGA |
| GenBank Accession | AL753694 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr3:21341626 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | F15B8 |
| Hit Gene Code | At3g57630 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | exostosin family protein |
| Insertion Classification | CDSi |
| Confirmation Status | failed |
| Other FSTs Supporting this Hit | FR801459 [GenBank] AL753694 [GenBank] |
Gene hit At5g65080
| Sequence (A. th genome BLAST matches underlined) | >28-K104556-0022-052-D04-8409 CATTTACAATGGCTGATCCAAGTTTCTTTTAAGTTGCTGAAAGAAAAGAACAAGGGTTCT ATGGAGAGGGACCCTCCCGATGAGTGAGACTAATCACGCCCGGGCCCCGCCTTATTGCCT CTCTGAATAGTTCGCAAACCCGGGGAGCCAATAAGGCGTCTCC |
| GenBank Accession | FR801464 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr5:26001583 - go to primer design |
| BLAST e Value | 1e-04 |
| Hit Clone Code (BAC ID) | F15O5 |
| Hit Gene Code | At5g65080 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | K-box region/MADS-box transcription factor family protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | FR801464 [GenBank] |
Gene hit F3F19
| Sequence (A. th genome BLAST matches underlined) | >28-K012473-022-052-D04-8409 TGATCCATGTAGATTTNCCGGACATGAAGCACTTTACAATGGCTGATCCAAGTTTCTTTT AAGTTGCTGAAAGAAAAGAACAAGGTTCTAGCTATGGGATCCTACTCTATAGTGAAAGNC GAAGGAACAAAGCCAACATAGGATCACCTCTCTTAGTAGTTACCAAACGCCATTGAGCCA ATAAGGCGTGTCCTCTATGGGATCCTCCCTATAGCGAGTCGCTCATGAGTCATGATTGTA TGAATGTGAACTTAACCTTGACTTCAAATGGGTTTATATCGTAAATAGAGTACTTCTATG GGATCCTCCCTATAGTGA |
| GenBank Accession | FR801462 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr1:4457888 - go to primer design |
| BLAST e Value | 2e-33 |
| Hit Clone Code (BAC ID) | F3F19 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
Gene hit At1g70760
| Sequence (A. th genome BLAST matches underlined) | >28-K012482-022-052-D04-8409 TTGATCCATGTAGATTNTCCCGACATGAANGCCTTTACAATGGCTGATCCAACTTTCTTT TAAGTTGCTGAAAGAAAAGAACAAGGTCCTATGTGATCCTCACTTATAGATAGGAAAAGG CGAAGTGACAAAGCAAACATAGCATACTTCTGTTATTATGTTACCAAAAACCATTGATCC AATAACGCGTCTACTCTATGGAATCCTTCCTATAGTGAGAACATAAGAAATGCTTTATTG ACTATCGAAACTATGAGACGACAGGGGACCACTAACTCCTAAGTCGAGACATTCGTAACA TGACCTTACAGACTTAACATAACCAGGAGTTAACAACCAGCAGGAATTGACCAGCGATGA GCTCGATATCGAGATCATATGCGATCGGTACTTCCTA |
| GenBank Accession | AL753693 [GenBank] |
| Graphic View |
|
| Predicted Position of Insertion | Chr1:26687425 - go to primer design |
| BLAST e Value | 7e-15 |
| Hit Clone Code (BAC ID) | F5A18 |
| Hit Gene Code | At1g70760 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | inorganic carbon transport protein-like protein |
| Insertion Classification | CDSi |
| Confirmation Status | failed, line belongs to a contamination group, please check line 052F01 |
Gene hit T21E2
| Sequence (A. th genome BLAST matches underlined) | >28-K012359-022-052-D04-8409 TTGATCCATGTAGATTNTCCCGACATGAANGCCTTTACAATGGCTGATCCAAGTTTCTTT TAAGTTGCTGAAAGAAAAGAACAACGCTTCTATGGAAGGCATCCTATACTAGAGTGAGAT TACTCACTCANNCGCCTACCTTGGCTCACCTCTCTTAGCTATATCCAACGACCATTGAAA CCAATAAGGCGTCGCCGAATATGGGATCCTCATTATTGCTGAGTCCATCATGCATCACAT GATTGATATGAATGTGAACGTTACCCTTGACTTCAAATGGGTTTATATCGGACATAGAGA ACTTCTATGGGATCCTCCCTATAGTGACTCGATNTACTCAGGGAAGACACACAGCTGTTT TACAATGATTCAAAGAGACCGAACCTTAGTGGAATTGGAATGTTGAAATACTATTTAAGC AGCTCAAACTATGTACCTTTTTCCATCTGACGTCTTGGGTCTTAAGCAGCCTCTCCACCA TAATATACCGGCGATTAGAAGCACAGGAGACACCGTAGAAGCGATTACACTACCAACCAC TGTACCAACAGAACTTCCACCACCAGTTCCAGTGCCCGGTTCCCTTGGTGGAATAAAATC TA |
| GenBank Accession | FR801460 [GenBank] |
| Graphic View |
|
| Predicted Position of Insertion | Chr3:4992677 - go to primer design |
| BLAST e Value | 3e-97 |
| Hit Clone Code (BAC ID) | T21E2 |
| Insertion Classification | Genome Hit |
| Confirmation Status | failed |
|
Last Updated on 10.06.2021 13:37 |
gabi-kat.de 
