SimpleSearch - Line and FST details
Line specific information
| Line ID | 052G11 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N404979) |
| Segregation Analysis | 50:21:10 |
| Confirmed for Hit | At1g55710 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 65067, 95488, 95489 |
Gene hit At1g79780
| Sequence (A. th genome BLAST matches underlined) | >87-K012482-022-052-G11-8409 TGATCCATGTAGATTNTCCCTGACATGAANGCCTTTACAATTGAATATATCCTCTTCCTT CTTTACTGTCCTTGTGCTCTCCACTCACTATGGGATCCTCCCTATAGTGAGGGCGAACAG CTTGAACCGATCGCCATAGCCGAGATTGAACAGAAGAATGTATTTCCACGTATTTCCGGT AAAAAACGACCGCATCCACCTTACCCTTGTCTGAAACCAGACATGGTGCCGGTATCCAGC CCTATGGGATCCTCCCTATATTGATTAGCACACGCTCGGTCGCCTTTCATCCTATACGCG CCCGACTATATTGTGCGGAACTTCAAGGCGCGGCTTTCCTCCTTGCGACAGAACGGGGAC GCTGCCGACCGGCTCATCCTCGATCCGAGGATGGGATTTTTCTTGAGCCACGCACCGGAA ACTGGTTGCACGTGCTGTCTAACCTTTAAAGCTGAAGGGGGGGTTGGGGCTTTCGCTATA GGACTCGGAGTCTCGCAAATCCTTATTGGGCGCCACCGTTGGCCTTACTGTAAAGGATCT GCGTCCAGCGAGCCTTGCGGGGGAACTTCACGCGATCGGCAATGGCGCTGACTACGTCCG AACCCACGCGCCTGGAGATCTGAAAAGCGCAATCACCCATCTCGGAAACCCTCGCGAAAT TTCCAAGTCGCGACCCCAGAAACCGAGGGTTTAGACATGCCTATGGGGAACCTCCCTAAA ATGAACCAACTCTCCACACCTCACCTCTTTCCATAAAAACCTATTTACCCCAAACCGGGT CCTGAAAACGGGTGTTTCTCCCTTTTTATATTTACACCGTATATTACAACCACAACAACC CTACACATCACCTCATAATCTAGAAAATAAGAACGTTGCCATATATATTAATTTTTCTTG TCTAATCTTTA |
| GenBank Accession | AL753871 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:30016815 - go to primer design |
| BLAST e Value | 6e-12 |
| Hit Clone Code (BAC ID) | F20B17 |
| Hit Gene Code | At1g79780 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Uncharacterized protein family (UPF0497) |
| Insertion Classification | CDSi |
| Confirmation Status | unknown |
Gene hit At1g55710
| Sequence (A. th genome BLAST matches underlined) | >87-K012429-022-052-G11-8409 TTGTCCATGTAGATTTCCCGGACTGAAGCCTTTACATTGAAATAGTGCTGGATACCATTG CTATGCGGGACGTTGGCACAGGCACTGGGAATCTCCCTATAGTGAGACCACAATTTAACG TTTGACTTAACAAGCAAATCCGTTTTTAGCGCTATGGGATCCTTCCTATCGTGATTCGAA CTACTACAACATAGGTAACTCATGGTTTGATTCTCACAACTGCTTTTAATCTTATATGAT ACGGAGTTGCTTTGATTTATGAAAAACCACCGTATAATTGTCTTGAGGTCTGCTGGGTCT TTCCACATAATTAAATTGAAAGAAGCGAGAAAATACGACGAGCCACTAACCATATGATTA TCGCCCGATCGGAAACAACCCATAATTGGTGATGAATGACGTGTGTTTTCATCCAATGAA TAACATTGTAAATGATATTTATGACTTAAGCAATAAGGGGAACTTATGTTGTTTTTTTTG TTTCAAGAAATCCACCCCACCATTTAATCAATTACGGGAGAGGCCCACTTTTTTTAAACC AAATAACCCAACGATTTTCTTGGTACCAAACACATACCATAAACTACTCA |
| GenBank Accession | FR801571 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:20826094 - go to primer design |
| BLAST e Value | 2e-08 |
| Hit Clone Code (BAC ID) | F20N2 |
| Hit Gene Code | At1g55710 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | hypothetical protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At3g06365
| Sequence (A. th genome BLAST matches underlined) | >87-K012299-022-052-G11-35St NTTTTGACGTNAGGGACTGACGCTANATCCCCTATCCTTCGCAGACCCTTCCTCTATATA AGGAAGTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCGC CTTCGGTTTAAACTATCAGACTGTTTAAGGGGCATTCTAACCCCACTCACGCTCGCACTT TGGCGCGTGTAAACCACATACGCTGACTCACGGTCTTCGAATTTTTTTTGCGGGGACTCA AAGTTCTTCCTCTGTTATCCTACTTATAGTAGGTAGGACGAGTCGGCTGTTTTGTTGAGC CGTCACACGGAATCGACAGCTCCAAGTGGGCCATTTTTGGTATGCAGAACTGGCGATGCC GAATGAACCGGTAGCCGGGTTACGGTGCCCAACTGCGCGCTAACCTA |
| GenBank Accession | FR801570 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr3:14201057 - go to primer design |
| BLAST e Value | 2e-55 |
| Hit Clone Code (BAC ID) | F21A14 |
| Hit Gene Code | At3g06365 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | novel transcribed region |
| Insertion Classification | TS2TE |
| Confirmation Status | unknown |
Gene hit FCAALL
| Sequence (A. th genome BLAST matches underlined) | >87-K012473-022-052-G11-8409 NTTTGATCCATGTAGATCTTCCCTTGACATGAAGCCTTTATCCATCCAAATGAGAACTGT ATCACGACTTTGGACCGATCATACAGACCTAGTGGTAACCTCCCTATAGCGAATTGGAAA AATAACCCATATACATTTTGATTTGTCAATATGTTCATATATGATCTATGGGATCCTCCC TATAGTGATAGACATGAGACTCTGTATTTAAAAGATGGTTATAATTACCTAAATCATAAT GATGTTACAGAAACGCCGGAGCTTTTGAGGTATGAAAAAGAGCAGTCCACCCGACTAAAT AAAAAACTGCACAGCGTAGCAATAATAAACAAATAAATAC |
| GenBank Accession | AL753870 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr4:8359703 - go to primer design |
| BLAST e Value | 7e-21 |
| Hit Clone Code (BAC ID) | FCAALL |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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