SimpleSearch - Line and FST details
Line specific information
| Line ID | 053A02 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N404994) |
| Segregation Analysis | 100:94:89 |
| Confirmed for Hit | At4g21120 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 4206, 4220, 4288, 7250 |
Gene hit At4g21120
| Sequence (A. th genome BLAST matches underlined) | >09-K012455-022-053-A02-35St TGACGTAAGGGATGACGCACAATCCCCTATCCTTCGCAGACCCTTCCTCTATATAAGGAA GTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCGCCTTCG GTTTAAACTATCAGTGTCCGGCCATGCTGATATAGTTCAACCGACTGGTACCCTGTAACG GAGATTTTCTTTCTTTCATTTGTAGAAGAGTGCTATGAGAGCTGTCGCGGCAAGCATTAC CACTGTCGCTGCTAATCGCAGGTCCGGTCTTTGCATTGACTGGAGCTATGGGACTACTAC GTCTACTGGTCACCACCCTCACGTCGGAAAGCCTGACGACGGAGCAGCATTCCAAAAAGA TCCCTTGGCTCGTCTGGGTCGGCTATGGGATCCTCCCTATAGCGAGTCGTATTACTCATA NCGCNGGGACAGCAGCAGAGGCGTAGCGGAACGTCCTAAGAACTTACTGCGTCAACTTCT ACACGACGAACATTCTAGAAATTATTGCGATCGCGTTGTTAGTACGCCCATACTCAACAA ATGTTTTACACAAATTTGTGCCAGAACCCAATGTGGGAATATGGTTTGTCGAACGGAAAT GGAGGAGGAAAAGTG |
| GenBank Accession | FR801598 [GenBank] |
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| Predicted Position of Insertion | Chr4:11273281 - go to primer design |
| BLAST e Value | 1e-13 |
| Hit Clone Code (BAC ID) | F7J7 |
| Hit Gene Code | At4g21120 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | amino acid transporter 1 |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | BX572125 [GenBank] BX572124 [GenBank] FR801598 [GenBank] |
Gene hit At1g15150
| Sequence (A. th genome BLAST matches underlined) | >09-K012481-022-053-A02-8409 NTGATCCATGTAGATTTCCCGGACATGAANGCCTTTACAATTGGTATCAGCAGAATTGGA TCACTACATCATTTTCTGTCCAAGGTATTTCTGAACTACCAGAATAATGCTTCATCGAAA TAACGATTGCTGAGGGCTGCTAATATTACAAAAGAAAAGACCAATTATTCACGGCAACCA CTAGGGCAGCCGTAACATATAACGATTTGGCTGCTACAAAAATGGTAAAATAGGAGGAAC ATCTGTGTCCCTGTAATCTTAGATGGGAAGTTCTGACTCTGTAAGTTCTGATTCATGGGC CACAGCCATTCGCTCCCTCGCTTCACGGGCCTATGGGATCCTCCCTAAAGAGAAGNNAAT GGTTTTTTTTTGCATATTTTTTTGCTATACCAATATTTACAAGGGTGACAGTTTTTTTTC ATTGTAAGGACAGACTAATTAAAGCAGTTACCATATTTCACACTAAAACTTAAAATATCG ACCTTTAGGGTCAATTGGTCTTTTTACACAAAATTTG |
| GenBank Accession | AL753941 [GenBank] |
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| Predicted Position of Insertion | Chr1:5214940 - go to primer design |
| BLAST e Value | 6e-157 |
| Hit Clone Code (BAC ID) | F9L1 |
| Hit Gene Code | At1g15150 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | MATE efflux family protein |
| Insertion Classification | TS2TE (3') |
| Confirmation Status | unknown |
Gene hit MNJ8
| Sequence (A. th genome BLAST matches underlined) | >09-K012358-022-053-A02-8409 TTGATCCATGTAGATTNTCCCGGACATGAANGCCTTTACAATTGCTTATACCTGTAAACA GATCTCTTGCTAGTTTCCACAGCTCATGTGGTACCTGGCTTCTGAATGCTTGGTCTTATG GGAATATCACATTGCTTGAGGCTGTTAATATTACACCCGAACCGACCCATGTTCACGGCG ACCTCATAGGGCGAACTCTTGCTATACTGTACCGTGACTGCTAGATATTGGGCTTTGTAA GAAGAACGTTGGATTGGGTATAGTCTTACAGGGCCTATATGGACTCTGTACACCGTAGCC CTGAAGCCTCATGACCCGCAAGCTATGGCATCCTGCCTTAAGTGATCCTCTTTCATAAAG AGAGGTTGGACTTTTTTTGGCATATTTTTTTGCTATAACAATATTTACAAGGGGGACAGT TTTTTTTCATTGTAATGACAGACTTATTAAAGCAGTTACCTTATTTCCCACTAAAACATT AATTATCGACATTTAGGGCCAATGGGTCTTTTAACACAAATTTGGTGTTAGTCTA |
| GenBank Accession | AL753939 [GenBank] |
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| Predicted Position of Insertion | Chr5:14809234 - go to primer design |
| BLAST e Value | 4e-35 |
| Hit Clone Code (BAC ID) | MNJ8 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
Gene hit At5g37220
| Sequence (A. th genome BLAST matches underlined) | >09-K012485-022-053-A02-35St CATTGNCGTAAGGGATGACGCACAATCCCCTATCCTTCGCAGACCCTTCCTCTATATAAG GAAGTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCGCCT TCGGTTTAAACTATCAGTGTCCGGCCATGCTTGATATATTCAACCGAATGGTACCCTGTT ACGGAGATTTTACTTTCTTTCATTTGTGAAGAGATGCTATGAGAGCTGTCGCGGCAAGCA TTACCACGGTCGCGTTAATTGGTGTTCCGGTCTTTGCATTGACTTGAGCTATGGGATCCT ACTATTAGTGATCAACCACCCAAACGTCGGAAAGCCTGACGACGGAGCAGCATTCCAAAA AGATCCCTTGGCTCGTCTGGGTCGGCTATGGGATCCTCCTATTAGCGAGACCNNAAGCAC CTATTGACGGGACAGCAACCCAGGCCTAGGGCAACATACATACAACTTCTTGGGTCAACT CTACCACGACGAACATTTCAAAAATTAAAGGCACTCCGCTGAAATAAGCACAATTATGAT CAATCTTTCCACCCGCATCTTGACAGAACCTGATCTGGGAGAACGATTGCTGAAGGAGAT GACACATGAAAGTGGGACAGAACCAATGTGGCCTCCATTCTATTGCAAAAAACTGGTGGC CCCCGGCCCCAACCTCCAAAGGGTTATCCCCCCTGTTTGACCTTAACCAAACTTTTTGAC CCCACTTTCAGAATGGCCCAAGAACGGGTAACCAAACCCTTTAATTCCGAGGACAAAAAA CATGCCCCTGCCTTAACCTCTCCTTGGACTCTCGGGAATCCTTGGCCGCCAAAACCCCTT GGCTTTTTTTGGAAAAAAAACAAAAAAGAGGTTCCCTCCTTTTTCCTTTACCCTGGGNGA AATTTTACCCTGAAATAGATTAAGAACCTTT |
| GenBank Accession | BX572126 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr5:14734538 - go to primer design |
| BLAST e Value | 2e-42 |
| Hit Clone Code (BAC ID) | MSK20 |
| Hit Gene Code | At5g37220 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | RING/U-box superfamily protein |
| Insertion Classification | 3' region |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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