SimpleSearch - Line and FST details


Line specific information

 
Line ID 053D12
Vector Used pAC161
Line Availability available as T3 set from NASC (N405040)
Segregation Analysis 50:45:36
Confirmed for Hit At5g27330
Parent of DUPLO pair 1008
Parent of pair(s) none

Gene hit At5g27330

 
Sequence (A. th genome BLAST matches underlined) 
>92-K012302-022-053-D12-8409
NCTTGATCCATGTAGATTTCCCGGACATGAANGCCTTTCCAAAGCTCTTACTTCTGATGT
TCGCGTGTTCAGCAGAGTGCTTGATGCTCAGCGCGGCCCTTCTTACATTGACTCGACCAT
GCTGATACGTATTGTTCTAGACCTGCTACTTCTGACAGCTTCTACTGGGATCCTTGCTAA
ACTGATAAACCATTTATGTAGTTGCTTATGAGCTTTTTACTCATAACTCCTCTATGTAGT
TGGTTCAATAACTATCATGTGAACCTTTTTTCCTTTCGTATCTATGGGATCCTCCCTATT
AGTG
GenBank Accession AL754117 [GenBank]
Graphic View Graphic view of gene At5g27330
Predicted Position of Insertion Chr5:9633055 - go to primer design
BLAST e Value 4e-50
Hit Clone Code (BAC ID) F21A20
Hit Gene Code At5g27330 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Prefoldin chaperone subunit family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit AL754118 [GenBank] AL754118 [GenBank] AL754117 [GenBank]

Gene hit MNC6

 
Sequence (A. th genome BLAST matches underlined) 
>92-K012298-022-053-D12-35St
CTGACGAAGGGATGACGCACAATCCCCTATCCTTCGCAGACCCTTCCTCTATATAAGGAA
GTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCGCCTTCG
GTTTAAACTATCAGTGTTTGAGTATGATGGTCAATATGGAGAAAAAGAAAGAGTAATTAC
CAATTTTTTTTCAATTCAAAAATGTAGATGTCCGCAGCGTTATTATAAAATGAAAGTACA
TTTTGATAAAACGACAAATTACGATCCGTCGTATTTATAGGCGAAAGCAATAAACAAATT
ATTCTAATTCGGAAATCTTTATTTCGACGTGTCTACATTCACGTCCAAATGGGGGCTTAG
ATGAGAAACTTCACGATCGATGCCTTGATTTCGCCATTCCCAGATACCCATTTCATCTTC
AGATTGGTCTGAGATTATGCGAAAATATACACTCATATACATAAATACTGACAGTTTGAG
CTACCAATTCAGTGTAGCCCATTACCTTACATAATTCACTCAAATGCTATGGGATCCTCC
CTATAGTGAGTCG
GenBank Accession FR801670 [GenBank]
Graphic View Graphic view of sequence FR801670 of line 053D12
Predicted Position of Insertion Chr5:21768086 - go to primer design
BLAST e Value 0.35
Hit Clone Code (BAC ID) MNC6
Insertion Classification Genome Hit
Confirmation Status unknown


Last Updated on 10.06.2021 13:37