SimpleSearch - Line and FST details
Line specific information
| Line ID | 053G07 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N307187) |
| Segregation Analysis | 8:7:4 |
| Confirmed for Hit | At5g02800 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 5949, 6010, 6016, 6022, 6026, 6027, 6033, 75268 |
Gene hit At1g19390
| Sequence (A. th genome BLAST matches underlined) | >55-K012455-022-053-G07-35St TGACGTAAGGGATGACGCACAATCCCCTATCCTTCGCAGACCCTTCCTCTATATAAGGAA GTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATAGGATTGTCGTTTGCCGCCTTCG GCTTAAACTATCGGTGTTCGCCCTATACCTGAGACCCGTACATAAAGATGGAATGGAGTC TGGAATCATCACATGGCTCCTATCATCACGATGCTAACTAAACCTAAACATATACCTCAC ACCTGTCCTACCTATCATTGTTACTCTATGGGAAACTGCCTCTACTGATTCGGATATACT GACACCCATTCAACCACCCCCACGCCTGACAGCCCGACGACTGAACAGGCTAACAGCAAA GATACCTTGGCTCTACTGGGGAAACTATGGTATCCACCCTACTACGTGCACGTCCACTTG GGGGCTTAGATGAGAAACTTCACGATCGATGCCTTGATTTCGCCATTCCCAGATACCCAT TTCATCTTCAAATTGGTCTGAGATTATGCCAACACCTTCACTCGTATACATAAATACTGA CCGTCTGAGCTACCAATTCAGTGTAGCCCACTTCCCTTCATAATTCACTCCAAAGCTATG GGATCCTCCCTATAGTGGGTCGTTTTCCCCTCACNGNGNGCCCGGACGCCGTGGGACCTC TGCGCCGTCGCGCCTTACCACACAGCCCCACTCCGGCGAGCGTACCGAACCTCTGTCGCG CCCGTGGGGCCCCCTTTTCGAAACCCCCCTCAACCGCTCTGGACGCGAACGCTGCCAGTC AGAAACATGGTCGCGTGAAATGCGGGCGTGGCCTTATAGGGGATGGCTTTCCGTGAGTGG GTGAGGGGGGCGCTTGCGAGCTACGCACCGGCACACCGCGGTCCTGCGCGCGCGCCGCAG ACACTATGGGCGGGTCCACGGGGAGGGGCGGACTCGCCGGTCGGAGAAAGTG |
| GenBank Accession | FR801714 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:6702008 - go to primer design |
| BLAST e Value | 3e-14 |
| Hit Clone Code (BAC ID) | F18O14 |
| Hit Gene Code | At1g19390 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Wall-associated kinase family protein |
| Insertion Classification | CDSi |
| Confirmation Status | unknown |
| Other FSTs Supporting this Hit | FR801714 [GenBank] |
Gene hit At5g02800
| Sequence (A. th genome BLAST matches underlined) | >55-K012298-022-053-G07-35St TTGACGAAGGGATGACGCACAATCCACTATCCTTCGCAGACCCTTCCTCTATATAAGGAA GTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCGCCTTCG GTTTAAACTATCAGTGTTTGGTACATGGGGTGAGTATTCAATTGATCATGCGATTGTCAA AGCCATTTACAATAAGCCATTTACAATTGAATCCTTTGTAAACTCTACCAAATCCTCCTT CTCCTATAAGACATTCTTTTCTGAAGTTTCTATGGGATCCTCCCTATAGTGAGTCGATNT ACTCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNCNNTNNGNNGGNNNCNNTNNANCTNNNNANNNAATGNNTATNNGANAAG GAGGATTTGGTAGAGTTTACAAAGGATTAATTGGAAATGGCTTATGTAAATGGCTTTGCA TCCTGACAATTGAAACTCCCCATGTCCAAACACTGATAGTTAAACCGAAGCTGGAAACAC AATCTGATCCCCGGCACCCTGTCCTCTCCCAATGAAAGAACTTCCTTATTTAAAGAAAGG G |
| GenBank Accession | CR356255 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:636606 - go to primer design |
| BLAST e Value | 7e-27 |
| Hit Clone Code (BAC ID) | F9G14 |
| Hit Gene Code | At5g02800 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Protein kinase superfamily protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | CR356257 [GenBank] |
Gene hit MLM24
| Sequence (A. th genome BLAST matches underlined) | >55-K012302-022-053-G07-8409 TGATCCATGTNGCATTTCCCGGACATGAAGCACTTTACAATTGAATATATCCTGTCCGGG AGATGAGTTTGAAAGCTCAAGGATTCAAGTCGCTCTATGGGATCCTCCCTATAGTGACNC CAGCCCGGGAAAAGAATTCGCAAGCTTAGGGATGACAATACCTATCTGGCGGACGACATG TTACCCTACATACGGAATTTCATTTTACTCAAAAAGAGTTATGAATGATACGAAATTACA AAATAGAGGTCCTTCTTTGGTATACCCAAAAAGAGTCAAAGTTGCCAAATGATACATAGA ACATATTTAAGGATAAACATTTGACTATGTCGGATGAAATAATAAACGCTATGGGATCCT CCCTATAGAGACTTCGTTGCTCAATAGCATCACAGTTTATGAGCTGCATTGCAGGGCAAT TAAAGAAAACGACGGTGTCCACATTTCCTACTTTACGGAACAGGCTGACTGGCTCTCCTT TCTTCGGAGACTGCTTGTTTGGAGTTTTAGTAGCATACAACGGAATACTGCCGACTAATG CAGACTACGATTCTCTTATTGCCATAGAGCCGCAACAGACCCTGTATGAACCTGCCCGCC AAACCTTACGACGACCATCAGGTAGAGCCCTCAATGGGAACCTTTCGCTCCCTGGGGAAC TGGACCAACCTCTTTTGGCAACATCATTACTGGGACCAAGGCAAAACCCCCCCAGAGTCG CCAATGATCCCTAACAACTTCCCCACAAGAAAAGTTTTCATGGTGCCACAAGTTAATAGA ATCTCCACTAACCCCGAAAGATATAGTGCGGCTTAATACCCACAATCTCCCATACTTAAA CAGGGGCCAATACACCCGAAATCAAATAAAAATAAA |
| GenBank Accession | AL754229 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr3:8365295 - go to primer design |
| BLAST e Value | 1e-87 |
| Hit Clone Code (BAC ID) | MLM24 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
Gene hit At3g28200
| Sequence (A. th genome BLAST matches underlined) | >55-K012481-022-053-G07-8409 NTGATCCATGTAGATTNTCCCGTGACATGAAGCCTTTACAATTGAATATATACCTGGCCC GGAGATAGAGTTTGAAAGCTCACAGGATTCAAGTCGCCCTATGGGATCCTCCCTATATGT GAGGAGTGAAAGCTCACTGTCATTATATCTTCATTTGTAGACAGCGGCTATCAAGCAACT TGATCATAATGGTTTACAAGGAAACAGGGAGTTCCTCGTCGAGGTTCTCATGTTGAGTCT TCTTCATCACCCGAATCTTGTTAACTTAATAGGATATTGTGCTGATGGAGAGTCAAAGGC TTCTAGTCTACGAGTACATGCCCCTATGGGATCCTCCCTATAGTGANNNNANNNNNNNAA NNATGAAAAACTCTTATGAAATACCCCCAATAAAGATGGTCTTAGGTTGGATCCGGTTTA CTTGTACAACTTTAATTACAGTATATGGATTGGTTTATTTAATGTAAACCGGTTTACGTA CTAAAGATTTAGATTTGAATCGTTGAAATTTCCAGCCAAACCAGAAAGAAAAGTGCCTTG TAATGGGTTATATTTAAGAAATTTTACAAAAATAGTTGGATAACCAGAAAATGAAAAAAC TAACCCCAAATTTAGATTATTTTTAATTCCGGTTAACAAAAAATTTCATTATTTATAAGA AGAAGTTAGTAAAATAACCAAATTTCTGTCATATTTAAGTAAATAACTTTGGAGACCAAC GTTAAATGGAAGGAGATTTATAAAAACCGGCATAATTATTTGGCGAAAATGGGTTCCCTT AATACTTAATTTGAGGAACAAAGGGGAATTTTCCCAAATATTTTTTTACTTCAAAACCAC AAGAAAAAGGGCCGGGTATTTATTTATCCAAAGGTGAAAACCACCAATGCCCTATTATTT TAAAATAAAAA |
| GenBank Accession | CR356256 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr3:10518020 - go to primer design |
| BLAST e Value | 5e-139 |
| Hit Clone Code (BAC ID) | T19D11 |
| Hit Gene Code | At3g28200 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Peroxidase superfamily protein |
| Insertion Classification | TS2TE (5') |
| Confirmation Status | unknown |
Gene hit At5g01890
| Sequence (A. th genome BLAST matches underlined) | >55-K012472-022-053-G07-8409 TGATCCATGTAGATTTCCCNGACATGAAGCACTTTACAATTGAATATATCCTGTCCGGGA GATGAGTTTGAAAGCTCAAGGATTCAAGTCGCTCTATGGGATCCTNCCTATAGTGACNGN CCAATCCAAACGAAATGAACTTCCTTATATAGAGGAAGGGTCAGTCAAACGATTGGGGCA TAGTGCGTCACCCCTTACCTGGGAGGACATATCACATGAATCCACTTGCTTTGAATCACG AGGACGGAACGTTTGCTTTCTCCACAAGACTCCTCGCGGATGGAGATCCATGGTTGGTAC CACAGCCTGCATATGCATATTCAACGATGGCCTTTCCTTTATCGCAATGATGGCATTTGT AGGAGCCACCTTCCTTTTCCACTATCTTCACAATAAAGTGACAGATAGCTGGGCAATGGA ATCCGAGGAGGTTTCCGGATATTACCCTTTGTTGAAAAGTCTCAATTGCCCTTTGGTCTT CTGAGACTGTATCTTTGATATTTTTGGAGTAAACAAGCGTGTCGTGCTCCACCATGTTGA CGAAGATTTTCTTCTTGTCATTGAGTCGTAAGAGACTCTGTATGAACTGTTCGCCAGTCT TTACGGCGAGTTCTGGTAAGTCCTCTATTTGAAACTTTGACTCCATGGGAATTGGGGATC CCCTA |
| GenBank Accession | FR801715 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr5:345033 - go to primer design |
| BLAST e Value | 2e-15 |
| Hit Clone Code (BAC ID) | T20L15 |
| Hit Gene Code | At5g01890 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Leucine-rich receptor-like protein kinase family protein |
| Insertion Classification | TS2TE (5') |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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