SimpleSearch - Line and FST details


Line specific information

 
Line ID 053H04
Vector Used pAC161
Line Availability available as T3 set from NASC (N405080)
Segregation Analysis 50:39:26
Confirmed for Hit At5g36130 At5g35160
Parent of DUPLO pair none
Parent of pair(s) 6753, 75890, 75892, 75894, 75896, 75898

Gene hit At5g36130

 
Sequence (A. th genome BLAST matches underlined) 
>32-K012298-022-053-H04-35St
TGACGTAAGGGATGACGCACAATCCCCTATCCTTCGCAGACCCTTCCTCTATATAGGAAG
TTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCGCCTTCGG
TTTAAACTATCAGTGTTTGAATCCAGAATACTTTCCGGAACCAGAGAAATTTGAGCCAAG
CCGATTTGAAGGAAGTGGTCCGAAGCCTTATACATATGTTCCCTTTGGAGGAGGATCCAG
GATATGTCCAGGGAGGGAGTATGCTCGTCTATGGGATCCTCCCTATAGTGAGTCGTTNTA
CTC
GenBank Accession AL754257 [GenBank]
Graphic View Graphic view of gene At5g36130
Predicted Position of Insertion Chr5:14209563 - go to primer design
BLAST e Value 4e-69
Hit Clone Code (BAC ID) MAB16
Hit Gene Code At5g36130 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Cytochrome P450 superfamily protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At5g35160

 
Sequence (A. th genome BLAST matches underlined) 
>32-K012481-022-053-H04-8409
TGTAGATTTCCCGTGCTCCATCAATGCCTCGCTATTAGTGTGTCATGGTTGGTGACGGAG
CTTCATATTCTTGGCATGGCTGTCGATACCATTTTAGTTTGCTGCACTATGGGATCCTCC
CTATAGAGAGCGATTACCATACGAGAGTTAACGATTGAGAACCAATGAACCTTCGAACCC
TCCATCTTCAAGTACGCATCCCACCTATGGGATCCTCCCTAGAGAGAGTCCTCCCCCTGG
CTGGGTGAGAGAAGACAATAAACCGACCTTCCTTAACAGACATAGACACCTTATGGGATC
CTCCCTATCGCCGCTTTTTTTTTTGGGGGGGCCCCCCCCCTGGAGGCATNACTTCCGCTC
TAGTTTGCCTCCTCCTCCTGCTGAGGGTATGCATGTCGGTTCCTCTAACTCTTATCGGAG
GATACTTTGGAGCCACGGCTCCTCACGTGGAAATCCCAGGGCGAACAGACGCAATTCCCC
CGGGAAACCCCCGCTCAGAAATACCCCATCCTGGCTTCTGG
GenBank Accession AL754262 [GenBank]
Graphic View Graphic view of gene At5g35160
Predicted Position of Insertion Chr5:13416029 - go to primer design
BLAST e Value 2e-30
Hit Clone Code (BAC ID) T25C13
Hit Gene Code At5g35160 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Endomembrane protein 70 protein family
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit AL754258 [GenBank] FR801725 [GenBank] FR801725 [GenBank]


Last Updated on 10.06.2021 13:37