SimpleSearch - Line and FST details
Line specific information
| Line ID | 054A04 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N405092) |
| Segregation Analysis | 50:47:46 |
| Confirmed for Hit | At1g67330 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 4482 |
Gene hit At1g67330
| Sequence (A. th genome BLAST matches underlined) | >25-K012357-022-054-A04-8409 TTGATCCATGTATGATTTCCCGGACATGAAGCCGTTTTATGATGCGCATTGGGAGATGAT AGTCGGGGGACTCACCTAATTGTGACTTCCAACAGGAGCCAGGGCTGACCGATCGTCAAC TATGTACTTTCTCACTCTGGCACGGTGCCAATATAGTGGGGGCGCGACGCACGTCTTTCT TCATGACGACAACCGCAAACGTGGATAACTGCTAATGCTCATGCCCTTGTTTGTGGGAAG ATTAAGGATGAGCTGCGTATGTATGCTCGTGGCACTTTCAGATACCTAACGCCGCTAACA TGACCGACCAGCCTGGTGACCGGTTTTGCTATGGGATCCTCCCTATAGTGAGTCGATTAA CTCANGGAGCGCCCTCTATTGTTCTCCATGTGAATGATAGGAGGGCTGCGGACTGCGGGG TGGTGTCCTGCGAGGAAGCTGGGTTATACTATCCTGAGAGGAGAAGTATCAGCTGTTCGG GGTTCTGAGGAGTCTGTGGCGACAACATGGCAGGAAAAAACCGGCATGTGGTCCACCATC TTGATAACCATTATGTGATCTGGATGACTGAGTACTAAACGACGGTCGAATCAGTACTGC AAATTATATTGCGGCTTCTGTTGGGATCTTCTACTCTCTGGAGCATCCCCTCCCGAATAA GGGATCCTCCTTTAGGGCACTCCCTTATTAGGGGACAACGAACTCGAGAGTGGGGAGAAA GAAGAGG |
| GenBank Accession | AL754301 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:25214720 - go to primer design |
| BLAST e Value | 5e-22 |
| Hit Clone Code (BAC ID) | F1N21 |
| Hit Gene Code | At1g67330 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | glucuronoxylan 4-O-methyltransferase-like protein (DUF579) |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | AL754302 [GenBank] AL754301 [GenBank] |
Gene hit MNC6
| Sequence (A. th genome BLAST matches underlined) | >25-K012297-022-054-A04-35St TGACGTAAGGGATGACGCACAATCCCCTATCCTTCGCAGACCCTTCCTCTATATAAGGAA GTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCGCCTTCG GTTTAAACTATCAGGATATATTCAATTGTAAATGGCTTCATGTCCGGGAAATCTACATGG ATCAGCAATGAGTATGATGGTCAATATGGAGAAAAAGAAAGAGTAATTACCAATTTTTTT TCAATTCAAAAATGTAGATGTCCGCAGCGTTATTATAAAATGAAAGTACATTTTGATAAA ACGACAAATTACGATCCGTCGTATTTATAGGCGAAAGCAATAAACAAATTATTCTAATTC GGAAATCTTTATTTCGACGTGTCTACATTCACGTCCAAATGGGGGCTTAGATGAGAAACT TCACGATCGATGCCTTGATTTCGCCATTCCCAGATACCCATTTCATCTTCAGATTGGTCT GAGATTATGCGAAAATATACACTCATATACATAAATACTGACAGTTTGAGCTACCAATTC AGTGTAGCCCATTACCTTACATAATTCACTCAAATGCTATGGGATCCTCCCTAT |
| GenBank Accession | FR801734 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:21768086 - go to primer design |
| BLAST e Value | 0.38 |
| Hit Clone Code (BAC ID) | MNC6 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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