SimpleSearch - Line and FST details
Line specific information
| Line ID | 054C08 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N405120) |
| Segregation Analysis | 100:91:87 |
| Confirmed for Hit | T4L20 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 1571, 9659 |
Gene hit At2g14010
| Sequence (A. th genome BLAST matches underlined) | >59-K012427-022-054-C08-8409 NTGATCCATGGTAGATTTCCCGGACATGAANGCCTTTACATTTGAATATATACTGTACAA CTCTTGGGCCCGGAATTTGGACAGGCTTGAATGGTATCCTGAGTATCCTGAGGCGTAGCC TAACAAACGAATGGGTGACAGATGAAGGAATACTTCTACGGTACGCTGCTCTATCTTTTA CTGATGGACCGGAGTGCTCCACTTCAGAACAAAGACAGATCTTTACGGTCTCGCGCACAT GTACAATCATCTACGTGGGTCACACTTTCGAGCGACAACATCGTGACCAATTGCGAAGAA CTAATACGGGACGACCGACTGACGGAGCCTACTTACTGCATTACATGGGGGAGGATGGCA TTCTCCTAGATATCCACCAACCAAAGCTGAATGATGCCTAACTAAACATAAGCGCGCATC GCGATGCCCTGTAACAGTGGCAACACCGTATGGCATACTATTTACTGGCGAACTACTTAC TCTATGGGATCCTCCCTATAGGGAGTCGTATTACTC |
| GenBank Accession | FR801756 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr2:5888699 - go to primer design |
| BLAST e Value | 9e-05 |
| Hit Clone Code (BAC ID) | F9B22 |
| Hit Gene Code | At2g14010 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | |
| Insertion Classification | TS2TE |
| Confirmation Status | unknown |
| Other FSTs Supporting this Hit | FR801757 [GenBank] FR801756 [GenBank] |
Gene hit At4g17520
| Sequence (A. th genome BLAST matches underlined) | >59-K012489-022-054-C08-35St TACAATTAGGAAAGCCAGACAGAACTCGATCGGTACTAGACTAGACAAACAATGAAGAGT GCTGGGAACGTCTTCTTTTTCCACGATGCTGCTCGCGGGGTGGAGGCTCATTTTAGGGAA CATTTGGATAAAACGACAAATTACGATCCGTCGTATTTATAGGCGAAAGCAATAAACAAA TTATTCTAATTCGGAAATCTTTATTTCGACGTGTCTACATTCACGTCCAAATGGGGGCTT AGATGAGAAACTTCACGATCGATGCCTTGATTTCGCCATTCCCAGATACCCATTTCATCT TCAGATTGGTCTGAGATTATGCGAAAATATACACTCATATACATAAATACTGACAGTTTG AGCTACCAATTCAATGTTTCCCATTACCTTACATAATTCACTCAAAATGCTATGG |
| GenBank Accession | FR801758 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr4:9772271 - go to primer design |
| BLAST e Value | 4e-10 |
| Hit Clone Code (BAC ID) | FCAALL |
| Hit Gene Code | At4g17520 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Hyaluronan / mRNA binding family |
| Insertion Classification | CDSi |
| Confirmation Status | unknown |
Gene hit MNC6
| Sequence (A. th genome BLAST matches underlined) | >59-K012297-022-054-C08-35St TGACGTAAGGGATGACGCACAATCCCCTATCCTTCGAAGACCCTTCCTCTATATAAGGTT GTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCGCCTTCG GTTTAAACTATCAGTGTTCGGATATATTCAATTGTAAATGGCTTCATGTCCGGGAAATCT ACATGGATCAGCAATGAGTATGATGGTCAATATGGAGAAAAAGAAAGAGTAATTACCAAT TTTTTTCCAATTTTAATATGTAGATGTCCGCAGCGTTATTATAAAATGAAAGTACATTTT GATAAAACGACAAATTACGATCCGTCGTATTTATAGGCGAAAGCAATAAACAAATTATTC TAATTCGGAAATCTTTATTTCGACGTGTCTACATTCACGTCCAAATGGGGGCTTAGATGA GAAACTTCACGATCGATGCCTTGATTTCGCCATTCCCAGATACCCATTTCATCTTCAGAT TGGTCTGAGATTATGCGAAAATATACACTCATATACATAAATACTGACAGTTTGAGCTAC CAATTCAGTGTAGCCCATTACCTTACATAATTCACTCAAATGCTATGGGATCCTCCCTAT A |
| GenBank Accession | FR801754 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr5:21768086 - go to primer design |
| BLAST e Value | 0.34 |
| Hit Clone Code (BAC ID) | MNC6 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
Gene hit T4L20
| Sequence (A. th genome BLAST matches underlined) | >59-K012357-022-054-C08-8409 GTGATCCATGTAGACTTTCCTGACATGAGAGCCTTTACATTTGAATATATACTGTACAAC TACTTAGGTCACGCATATTTGGACAGGCTTGTATGATATGCTGCGTATACCGAGGCGTAT GTCCTACACAAACGAACGGGTGAAGACGAAATGAATACTTCTACGGAACGCTGCTATAAC TCTTACTGAATGACCAGGAGTGCTCCTCTACAGAAAAGAAACTGATCATACCGGAATCAC GCCAATGCTACAAACCTCTACATGGCTCACAACTTAGAGCGACAAAATCATGTACCAATT GCGAATAACTTATCCGGGTCTGGCGACTGACGGGGCCGACATACTGCATTTCATGGGGCG GGATGGCACTCTCGTAGATATCCACCCAAGCCAA |
| GenBank Accession | AL754407 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr4:16530330 - go to primer design |
| BLAST e Value | 7e-15 |
| Hit Clone Code (BAC ID) | T4L20 |
| Insertion Classification | Genome Hit |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | AL754408 [GenBank] AL754407 [GenBank] |
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Last Updated on 10.06.2021 13:37 |
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