SimpleSearch - Line and FST details


Line specific information

 
Line ID 054E07
Vector Used pAC161
Line Availability available as T3 set from NASC (N405143)
Segregation Analysis 108:81:48
Confirmed for Hit At5g48150
Parent of DUPLO pair none
Parent of pair(s) none
Note

Gene hit At5g48150

 
Sequence (A. th genome BLAST matches underlined) 
>53-K012301-022-054-E07-8409
CACACGAATGGATCTTTAGAAGAATGTAATATATGAAATCACTCTATGGGATCCTCCCTC
TCGAGGCATCCAACCAAGATACAAAGCTCCATCTCTTTCTTCTATCCTGTCCTTGTCTGA
GTTGTTCCTAAGCAGACTTTTAATGGTTGAATTCACCAAGGGACTCACCGGCTAAGGAGT
GATACCCGCCATCCCAGACCGAGACCTCCATTGTCCTAGGAGCTCGTGTCTCTCCACCCG
TGCAGCTCCTTCTCATGCGATGATGTTCACGACGTCTCTTGCTATGGGATCCTCCCTCTC
GTGACGCCTCT
GenBank Accession BX572127 [GenBank]
Graphic View Graphic view of gene At5g48150
Predicted Position of Insertion Chr5:19522431 - go to primer design
BLAST e Value 7e-89
Hit Clone Code (BAC ID) MIF21
Hit Gene Code At5g48150 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation GRAS family transcription factor
Insertion Classification TS2TE (3')
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit BX572131 [GenBank] BX572129 [GenBank] BX572128 [GenBank] BX572130 [GenBank] BX572130 [GenBank]

Gene hit At5g38430

 
Sequence (A. th genome BLAST matches underlined) 
>53-K012297-022-054-E07-35St
TGACGTAAGGGATGACGCACAATCCCCTATCCTTCGAAGACCCTTCCTCTATATAGGAAT
TTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCGCCTTCGG
TTTAAACTATCAGGAAATCCTTGGATATCGTTCAGGTAGCCCACGCCGCGCTTGAGCGCA
TAGCGCTGGGTTTCCGGTTGGAAGCTGTCGATTGAAACACGGTGCATCTGATCGGACAGG
GCGTCTAAGAGCGGCGCAATACGTCTGATCTCATCGGCCGGCGATACAGGCCTCGCGTCC
GGATGGCTGGCGGCCGGTCCGACATCCACGACGTCTGATCCGACTCGCAGCATTTCGATC
GCCGCGGTGACAGCGCCGGCGGGGTCTAGCCGCCGGCTCTCATCGAAGAAGGAGTCCTCG
GTGAGATTCAGAATGCCGAACACCGTCACCATGCACTTTACTCTTCCACCATTGCTTGTA
ATGGAAGTAATGTCAGTGTTGACCTTCTTAACTGGGAATCCAGTCATGGATTTGAGGCCG
CCGAATGGAGCCACCGCGGCCGATTGCACCGTANAAGCACGGCTGACTGTAGTCACAGCT
GAAGAGGATATCATAGAAGCCATTTTTCTCACTTCTGTATG
GenBank Accession FR801772 [GenBank]
Graphic View Graphic view of gene At5g38430
Predicted Position of Insertion Chr5:15384998 - go to primer design
BLAST e Value 6e-06
Hit Clone Code (BAC ID) MXI10
Hit Gene Code At5g38430 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Ribulose bisphosphate carboxylase (small chain) family protein
Insertion Classification CDSi
Confirmation Status failed
Other FSTs Supporting this Hit FR801772 [GenBank]


Last Updated on 10.06.2021 13:37