SimpleSearch - Line and FST details
Line specific information
| Line ID | 054G06 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N405166) |
| Segregation Analysis | 50:46:44 |
| Confirmed for Hit | At3g58580 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 10758 |
| Note |
Gene hit At3g58580
| Sequence (A. th genome BLAST matches underlined) | >47-K012484-022-054-G06-35St TGACGTAAGGGATGACGCACAATCCACTATCCTTCGCAGACCCTTCCTCTATATAAGGAA GTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCGCCTTCG GTTTAAACTATCAGTGTTTCCCGGGGATGACCATCATACTCTTTCTTTCTTCCACCACCA CAACCACTACATCTTCCACCATCACAACCACCCGATCTTTTTTTCGATAAATCTATGGGA TCCTCCCTATTAGTGAANGAAATGTANATGTCCGCAGGCGATATTATAAAATGAAAGTAC ATTTTGATAAAACGACAAATTACGATCCGTCGTATTTATAGGCGAAAGCAATAAACAAAT TATTCTAATTCGGAAATCTTTATTTCGACGTGTCTACATTCACGTCCAAATGGGGGCTTA GATGAGAAACTTCACGATCGATGCCTTGATTTCGCCATTCCCAGATACCCATTTCATCTT CAGATTGGTCTGAGATTATGCGAAAATATACACTCATATACATAAATACTGACAGTTTGA GCTACCAATTCAGGGTAGCCCATTACCTTACATAATTCACTCACATGCTAGGCAGTCTGT CAACTCGGCGTCTATGGGATCCTCTATTTAAGCGANGACCCGGGATAACAGGGGCGGGTT CTGGGTCTCTCGCTGGGTCCCTTACCTGGGTCTATGTCAAATCTTAGTATTGCCAACAAT GGGCCAGCTTCCGGTAATCCTTCCAATATTACTCAGAAAAAGGGAGGA |
| GenBank Accession | AL754548 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:21663614 - go to primer design |
| BLAST e Value | 8e-30 |
| Hit Clone Code (BAC ID) | F14P22 |
| Hit Gene Code | At3g58580 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | DNAse I-like superfamily protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At4g16444
| Sequence (A. th genome BLAST matches underlined) | >47-K012427-022-054-G06-8409 CTGATCCATGGTAGATTTCCCGGACATGAANGCCTTTACAATTGAATCTGTGCTGCTCTC GCATATAGTGTAGCCTGACTCCTCAGAATAAAATGAACGGCCTACATCTATCGACCGTTT ATAGCATACCTTTCTCCTTTATACTCTCATATGTCTCTCTCTCTCTGAATTTCGAAAATT ATACTGCTCTTCTGCTTCGTACTATGGGATCCTCCCTATAGTGAGTCGTATTACTCATNC AGNTCGAGCAATTCACTAACTCATCTCCTTTCAGATCAACAAAATACAAGCCTTACTTGA ATCCGTCGTGTTCTGGATAAACATCCCCTCTAATCAATGGAGGAGGAAAAGATCCTATGG GATCCTCCCTATAGCGAGACAAACTACACACGCGGGGAGTGTACCGGCGACGCCACGTCA CGGATCCTCCGGACAAACGCTAATGGGAGACTACCTATATCCGACGCGCTTACGTTATTG GGAAGCTCCCTACCGTGAGTCGTAATACTCCCTCGACTAGGGGACACTACCTAAAGTGAG ACCCATTCCTCATTCTCGACCACACAGCGACACGCCGCCCCCTCCTAAAGCCCTCCGCGA TCCCCCTCCGCCCCACCCCCCCCCCCCACCCGCGCGCGGGTCTCCCACTCCCACCACCTC CACAACACCCATCTCCAATCCCCCACCCCCACACCTCCACCCTCCCCCACCCACCACACG TCACGGCCTCATCAACCCCACTCCTTCAAACTACCATTCCCTCCACAGCCACCCGCCCCA CCAATCCCACAACACACCAAAAACA |
| GenBank Accession | AL754547 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr4:9275917 - go to primer design |
| BLAST e Value | 3e-23 |
| Hit Clone Code (BAC ID) | FCAALL |
| Hit Gene Code | At4g16444 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | tail-anchored protein insertion receptor WRB-like protein |
| Insertion Classification | CDSi |
| Confirmation Status | failed |
Gene hit K14B20
| Sequence (A. th genome BLAST matches underlined) | >47-K012301-022-054-G06-8409 TTGAATTATGGAATTTCTTAGATTGGGTCGAAGAACACGAGGGAATCAGAGCTGCGAACC GAAATAAGCAGCTTTTGAGAGAGGCTATGGGATCCTCCTTATAGTGACANCCAAAAACCG CCTATCTGTCATAAACTTCTCTCCTTCCATAACCCTTATGCTGATTATTGATTCTATGGT GACTCACCCATCTGTTCTAGCTAATTATAACTCATCTCCATTTAGATAAACTAGTATAAT ATCCTTAATGGAATCCCTCTTGTTCTGGCTCAACATATCGTCTAATCAATGGAAGAGGAA AAGATTTTATGGGATCCTCACTTTNCTGAGACAACCGAGACACGATCGAGGCGTACAGTC AAAGCAACACACACTGTCATATGGTCAAACGTCTATGGGATC |
| GenBank Accession | AL754545 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:26367343 - go to primer design |
| BLAST e Value | 8e-30 |
| Hit Clone Code (BAC ID) | K14B20 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
| Other FSTs Supporting this Hit | AL754545 [GenBank] |
Gene hit At5g65225
| Sequence (A. th genome BLAST matches underlined) | >47-K012297-022-054-G06-35St TGACGTAAGGGATGACGCACAATCCCCTATCCTTCGCAGACCCTTCCTCTATATAGGAAG TTCATTTCATTTGGAGAGGACAGGGTACCCGGCGATCAAATTGTCGTTTCCCGCCTTCGG TTTAAACTGTCAGTGTTTGACAGCCATGACCGTCTGACTCTCTGGTTACTTCACAACCAC ATACGGAACACTCCCGCAAATAACAAGGACCCTATAGTTTTTTCCATACAGCCATGGGAT CCTCCCTACCACGACCCGATTACTCACGGGAGAGCGAGGCATTCCATGCGAACTTGTCTT CTGATCACCCACCCTAACGTTGCGAAGCCTGACGACGGTGCAGCATAGCATCCTACGTAC CGTGACGGCGCGCAACACTAACGCGTGGATTCAGTTCGCGAGGCAAGGGGGCCCTACATA CAGCAGTCAGGGATCCTGCCTCTACTGTGGCTTTTCGCAAACCCCACTTTTTGACTATAT GGGTCTGGAGACCTTCGATGGTCCTCTCTTTTTTACGTTGATACTGACCGTACACTCTCC CACCCCTTTGTATACCAGGAGCTGCCTTTACTTACTCACATGCTATGCAAGCTTGTAACA CGGATGTCAAGGAATTCTCCCTAGCATGGCCACTGGCCTTAGCTATCATTATAAAAAAGC AGTTTGCTTGGCTTAGCCCAAATGTTTAAGGTGG |
| GenBank Accession | FR801797 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr5:26064111 - go to primer design |
| BLAST e Value | 2e-12 |
| Hit Clone Code (BAC ID) | MQN23 |
| Hit Gene Code | At5g65225 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | hypothetical protein |
| Insertion Classification | CDSi |
| Confirmation Status | unknown |
Gene hit At1g48090
| Sequence (A. th genome BLAST matches underlined) | >47-K012480-022-054-G06-8409 CTGATCCATGTAGATTTCCCGGACCATGAAGCCTTTACAATTGAATATATCCTATGGGAT CCTCCCTATAGGGATGCAGGACAAAATTGTCACCCCCCTAGGGGGTCCCCCCTATCTGGA CCCCCGGCTACCCCGTCCTATGGCAAGGAAACGAACTTCCTGAATTAGAGGCAGGGTCCT GCGATGGATAAAGGCATAGCGTGCCATCCCTTATGGCATTGTCGACTATGGGACCAGTCT ACGCTGCTAACCACTTATGGCCTGCCTCACCGGCCTCTAGTATTACTAACCTGCCATCAC AGCTTGTGCAACAGGAGATGCCCAGCGAGAAAAAACACTCGGGACGTTATGAGTGGCGAC AGACCCCGCTTTGACACCAAGACACGTTTGTGGCCTGCAGCAAACGCTCGCACACCGTTT ATGCACTGCCACTATCTGATACTCCCTATAGCGCGTGTAGCTATCAACTCTAATATAACA AGAGCTGCTAATCTCTGCTCCGGAAACGGCTCGATATGAGTTTTCTGGACGCACTTCAAA GCTATTAATGAGTCTGATTGGATAAGTCCTGACCCTTACGTACTTTATTTTGTAGATCTA CAAAT |
| GenBank Accession | FR801798 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr1:17742431 - go to primer design |
| BLAST e Value | 2e-46 |
| Hit Clone Code (BAC ID) | T2J15 |
| Hit Gene Code | At1g48090 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | calcium-dependent lipid-binding family protein |
| Insertion Classification | CDSi |
| Confirmation Status | unknown |
|
Last Updated on 10.06.2021 13:37 |
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