SimpleSearch - Line and FST details
Line specific information
| Line ID | 054G08 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N405168) |
| Segregation Analysis | 134:109:98 |
| Confirmed for Hit | At3g25840 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | none |
Gene hit F5J6
| Sequence (A. th genome BLAST matches underlined) | >63-K012471-022-054-G08-8409 NTGATCCATGGTAGATTTCCCGGACATGAAGCACTTTACAATTGAATATATCCTGCACGA CTAGTTGAGGACTCCATCCTAGACAGGTGGCGACATCTCTGTATGTCTGGCGTTCGATAC AGCATGCTTTTTAACGACTGCCGGGCCCCGTGTAGTACAGGGTTTCACTCAGGAGATGTA GAGATATTACTTCTATGTAATAACTCTCTCTGCCTTGAGAGCCCAATATCGTTTCGCTAT GGGATCCTCCCTATAGAGACTCCCTATAGGGAAGNGTCTTATGTGGGGCATACTTTATCC GCCGTGTCTAGGCTCGACCATACCACAATCGCCTACGCCATCACTTATAGGACCCACCTC ATACAAAAATATGGTGACCCCTTTATGGAGTGATGTAAATAAGAGCATTCCATGACGGGG TCGAATCTCATAACGCTTAAAGGTATGTGGATTTTTCGAATTTTGGGCCGAACTAGAAAA GCCTGATTGACGTGCCTATATACGTGTATAAGAAAGATATTCCTAAGAAGATATTTTCTA TGTTTTAGATTCGAAAGAACTTAGCCATGTTCTCGACCATACCCATTACGGCTAAAGATA TTACCAAGATATTCTCCACTTGGTCTATATCGGAGACCATCCATCTTCACTCTCAATTCC CAACAATTAGATCGTAGATCTCCTTACCAAGGATGTCAATTAATTCCGCATATTTATTTC CTTGGTAACTATTTCCGACAGAGGGAGGTCCCCTCTC |
| GenBank Accession | AL754551 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr2:7525950 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | F5J6 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
Gene hit At3g25840
| Sequence (A. th genome BLAST matches underlined) | >63-K012480-022-054-G08-8409 TGATCCATGGTAGATTTCCCGCACATGAANGCCTTTACAATTGAATATATCCTGCACGAC TAGTTGAGGACTCCATCCTATGGGATCCTCCCTATAGTGAGNCGGCGGCGAACACATCAT TGTCAACGTGCGCCGGACCGCGTGATTACAGGGTCTCCACTTGAGATAGTAGATATATTC CTCTATTTAAGAGTCATCGTTCTTGTGAGCCCAACAGACAGAGGACTTAGGCATAGCTCC CTCCTAGGGAGCCTAATAAATGACAAGATACGTACGAGATACTGACCTGATGGAAGATAT CATCCCACGTGGTGCGACATGACCGAAGACGACGCGCAACTATAGCACCATAACGTGTTG GAAAGAGACATACGTGACGAGAGAGATATGGACAGGGGGGGAAGCATAATACATAGGGAT TCTGACGGAAGTAAGCCGATAGACACTGATGGTGATCGCACGAGGGAAACAGAACTACAT ATCAGAAGGGACATAGAGTCGGACCGTGAAAGACGAAGAGATAAGGAACGAGATCGCGAC ATTGATATGGATAGGACACCGGAGAGGGATGGATATTATGTACGG |
| GenBank Accession | FR801803 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:9456651 - go to primer design |
| BLAST e Value | 5e-25 |
| Hit Clone Code (BAC ID) | K9I22 |
| Hit Gene Code | At3g25840 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Protein kinase superfamily protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | BX649678 [GenBank] FR801802 [GenBank] FR801803 [GenBank] |
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Last Updated on 10.06.2021 13:37 |
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