SimpleSearch - Line and FST details


Line specific information

 
Line ID 054H02
Vector Used pAC161
Line Availability available as T3 set from NASC (N405174)
Segregation Analysis 50:40:28
Confirmed for Hit At1g72260
Parent of DUPLO pair none
Parent of pair(s) 3866, 11190

Gene hit MBL20

 
Sequence (A. th genome BLAST matches underlined) 
>16-K012480-022-054-H02-8409
TGATCCATGTAGATTTCCCGGACTGAAGCACTTTACTATTAGAATTATTACACTCATAGT
GTTTGAGACTGCGTGCATTAGTGTCAAAGAGTTGTGTATACACGTTGGAAACCTAGCTAT
GAATTACCACTTGGACACAACTAATATGAAGTAATGGGCTCTTAATCCTATGGGATCCTT
CCTCATATTGATATTCTGGTTTGTGTGTGTGTGTGTGCGTGTGTCGTAAAAGGTTTGTTC
GATCACTATGGGATCCTCCCTATAGTNGAGCGACNCNCGACAGGGTACCACCACCTTNTT
TTATTTTTTAAAAATGAAAATTTCTCTCAAAGGTTGTAAATAAATATCCCCCATGCTACA
TTAATATTAAACATGGGGATCCATGACATTAAAAAAGA
GenBank Accession AL754570 [GenBank]
Graphic View Graphic view of sequence AL754570 of line 054H02
Predicted Position of Insertion Chr5:1872088 - go to primer design
BLAST e Value 1e-13
Hit Clone Code (BAC ID) MBL20
Insertion Classification Genome Hit
Confirmation Status unknown

Gene hit At1g72260

 
Sequence (A. th genome BLAST matches underlined) 
>16-K012454-022-054-H02-35St
TGACGTAAGGGATGACGCACAATCCACTATCCTTCGAAGACCCTTCCTCTATATAAGGAT
TCAGATTTTCTATGGGATCCTCCCTATAGTGAGTCGTATTACTCAAAATAATGATAAAAA
TGAGACTTAAGGAGTTCGCTTTACCAGAGTTCTGGAGAGTGTTCATGGCACCACACACAG
AAGTTTCACACCCTAACTTGCAGTGCTCATTGGTAGCATCAGCTGAGTTTTTTTTTAAAG
TATTAAAATCTTGATCGATCTTTTAACAAATAACATCAAAGACATTTTCCTATTTACCTG
AGTTTTCGAGAATGGCGTTTACCCAACCTCGAGGGCATGTATCAGAGTTTTGGCATCCAC
TCACTTGCATACACCTTCCCTTGGAAAACCTTATACGGCATACACTATAGCCATTTCTAT
GGGATCCTCCCTATAGTGAGTCGTATTA
GenBank Accession AL754568 [GenBank]
Graphic View Graphic view of gene At1g72260
Predicted Position of Insertion Chr1:27198945 - go to primer design
BLAST e Value 3e-162
Hit Clone Code (BAC ID) T9N14
Hit Gene Code At1g72260 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation thionin 2.1
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit AL754564 [GenBank] AL754565 [GenBank] AL754568 [GenBank]


Last Updated on 10.06.2021 13:37