SimpleSearch - Line and FST details
Line specific information
| Line ID | 054H11 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N405183) |
| Segregation Analysis | 100:98:97 |
| Confirmed for Hit | At3g51520 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | none |
Gene hit At1g36290
| Sequence (A. th genome BLAST matches underlined) | >88-K012297-022-054-H11-35St TTGACGAAGGGATGACGCACANTCCCCTATCCTTCGAAGACCCTTCCTCTATATAAGGAA GTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCGCCTTCG GTTTAAACTATCATTTCATTTCATCATACTCATTTACTCTTCCAAGGTATCACTTCTGGC TGCTAAATTGAGCCTATGGGATCCTCCCTATAGTGAGTCGTATTACTCACTCANGAAAAC ATTTGGAACAGGAACTTTTCTTTGCAGCTAGCTAAACCAAATTCTTCTATTCCACATTGG CTCTTTGCGGATGATACCCTTGCAAAACAGATGCGGAGGAATGTAAAACGGTGATGGGTG TTGTTATAAATAATAGTAAGAGCTGTAGGACAAGAAATAAAGTCCAATTACTCATCGGCC TTGACTGGTAAGCGCGTTGCAAAGAACAGATTATATAGAAGAACTGGNAAAGTACCTTGG AATTACTAAGGAATGTCTAACGGCTACCTATTAAGTATACTA |
| GenBank Accession | AL754609 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr1:13643963 - go to primer design |
| BLAST e Value | 2e-61 |
| Hit Clone Code (BAC ID) | F15C21 |
| Hit Gene Code | At1g36290 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | |
| Insertion Classification | TS2TE |
| Confirmation Status | unknown |
Gene hit At3g51520
| Sequence (A. th genome BLAST matches underlined) | >88-K012301-022-054-H11-8409 TTAACAAAGGCTAACCTTTCCCAAACTCCGTTAGGCAATAATTATACGGGTAAATGAAAA GAATGAACCTTGCGGGCTCTTTAAAGATGGGTTGTTGATAAAAAGTTGGGGAGTTAAAAG ATTGGTTATTTGGGCTCTCGCACTCAAGAGACGAGAGAACGATAGATAGATCTGAGTAGA ATCTTCGATTCATTATCTCGATAGTCGTCTTTCATCTGTGAAGAAGCGGACAAACCAAAG AATCCACCGGAGCTATGGGATCCTGCCTATCTCGATATAGNGANNNNGNNGNNCNNNNCN NNCNNTNCCACTCTNTCNTCGCCTTGGCCCTCTGGCTTGGCGCCCTTCCCTTCCGCGTCG CTCTTGTTCTCTGTTCTCTCCTTTTCCTTCCTCCTTCTCTCTCTCTCGTGTCTCTCCCTC CCCTCTCTCTCCTCTCTCTCTGCGCCGCTGCTCCCCGCTCTCTCCCCTTTCTCTCTTCTG CCCTCCTTTGGTTTTTCTCCGCGGCCTTGGGCCTTGCTTCTCCTCTGTTTCTCTTTCTCC CCTCT |
| GenBank Accession | AL754610 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr3:19110473 - go to primer design |
| BLAST e Value | 2e-67 |
| Hit Clone Code (BAC ID) | F26O13 |
| Hit Gene Code | At3g51520 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | diacylglycerol acyltransferase family |
| Insertion Classification | Promoter |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | AL754616 [GenBank] AL754616 [GenBank] |
Gene hit At3g22270
| Sequence (A. th genome BLAST matches underlined) | >88-K012480-022-054-H11-8409 TTTGATCCATGTAGAATTTCCCGTACATGAANGCCTTTACAATTGAATATGCAAGGCTTG TGGCCTGCGGACAGATGGAAGTGTAATTTTACCAAGAGCATCTACATGAACTTGTGGATG CTGGACAAAACTATTACGGTACCTAGGCTGGGGGTCCTTCAGCTGAGCAGGATATAACTG ACAGATGGCTTTATATACGTCTACTCTTAGGACGCTTTACTATGCAGAAATAATAATGAC ACTCAGGATTATCTCTGTGTGAATTGGAATGCTCGTATCTTTATTATACTCTCTATTTCC TACGATATCATGCCCTTTGATCTACACTGCTGTCCAGTTCCACTTATCTAACTAGTGGGA TCCTTCCTATAGTGAGAATAGACTGAATATACTATGCGTTTAAACTCATAGATCCAAACC TCCACACTATGGGATCCTCCCTATAGTGTAAANGANCTTGCTCCTTCTCTATCTCTCATG TATATACATATCCTCTCTCTATCTCT |
| GenBank Accession | AL754615 [GenBank] |
| Graphic View |
|
| Predicted Position of Insertion | Chr3:7876883 - go to primer design |
| BLAST e Value | 2e-46 |
| Hit Clone Code (BAC ID) | MMP21 |
| Hit Gene Code | At3g22270 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Topoisomerase II-associated protein PAT1 |
| Insertion Classification | CDSi |
| Confirmation Status | unknown |
| Other FSTs Supporting this Hit | AL754614 [GenBank] |
Gene hit T6A9
| Sequence (A. th genome BLAST matches underlined) | >88-K012357-022-054-H11-8409 GTGATCCATGGTAGATTTCCCGGACATGAAGCACTTTACAATTGAATAGTTCTCGCTTCG CGCCTGCGGACAGAAGGGAGTGTCACTTTACCAAAATCCTATACGTGAACTTGTGGATCG CGGGACCAAGCATATACGGACCCTTGGCTGGGGTCTCTCAAGAAGGACTGGATATAACAG AGCACGCTTGGTTAATATACTCTTACGTTGAACGAACGCCTCAAGTGACAGAAAACACTA ATCACCTCACGGTAAATATCTTGTGATAATTACACGACATCCGTCTTTCATGTAGCAGAA TTCCCCCTAGAATATGATTCCCATGGATCTACGGGACTCTCCGATTCTTCTTATAGAGAC TCTGGTGTACTCACTATAGTGAGACGATCCACACAATAATATGCGTTTAAACTCATAGAT CCAAACCTCCATACTATGGGATCCTCCCTATAGTGAGTCGATTTACTC |
| GenBank Accession | AL754611 [GenBank] |
| Graphic View |
|
| Predicted Position of Insertion | Chr1:484467 - go to primer design |
| BLAST e Value | 3e-14 |
| Hit Clone Code (BAC ID) | T6A9 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
|
Last Updated on 10.06.2021 13:37 |
gabi-kat.de 
