SimpleSearch - Line and FST details
Line specific information
| Line ID | 055A05 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N405189) |
| Segregation Analysis | 50:43:37 |
| Confirmed for Hit | At2g24645 |
| Parent of DUPLO pair | 12662 |
| Parent of pair(s) | none |
Gene hit At2g24645
| Sequence (A. th genome BLAST matches underlined) | >33-K012470-022-055-A05-8409 TTGATCCATGTAGAATTTCCCGGACATGAAGCACTTTACAATTGAATATTACACCTTATA ACATCCTACGTTCTGCACTGGTTAGTTTCAAAACTCCAAGCCATTGTCTTTTTACAGTCC ATCAAATTTGAATCTTTTGTGTGAATCTTTGTTTCAGCGTCTTCCGATACCCTTCACGAG GATGAATGGTATCAATGAAGAAACTAAAATGACTCTGTTGGATAAACATGGTATGAAGTG GTTAACGACTCTGCGGTTGGTGGACTACAAAAGAAAAAGACTGGGAATGGTAGGAGGCTG GAAAGGATTCATCCAACTTAACGGTGTGAAGGCAAACGAATCCATCATGTTGGAACTGAT TTGGGAAGAAGAAACAAGTTGCGTCCTTAAGTTCTGCTCCAAGGTGAAGCTATGGGATCC TC |
| GenBank Accession | AL754629 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr2:10481103 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | F25P17 |
| Hit Gene Code | At2g24645 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Transcriptional factor B3 family protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | AL754627 [GenBank] |
Gene hit MNC6
| Sequence (A. th genome BLAST matches underlined) | >33-K012453-022-055-A05-35St TGACGTAAGGGATGACGCACAATCCCCTATCCTTCGAAGACCCTTCCTCTATATAAGGAA GTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCGCCTTCG GTTTAAACTATCAGTGTTCGACAAATACCTCTGCATGTCTCAACGATGGTGGTTACGGCC AATGCCGTCATTGCGATAGAGGAATTAGCCATTTTTTTTTATGCCTCTGCCGACAGTGGC CCCAACGATGGTCCTCCACCGACGTACATTTTGATGGAACGACAAATCACGACCCGCCGT ATTTATAGGCAGAAGCAATAAACAAATTATTCTAATTCGGAAATCTTTATTTCGACGTGT CTACATTCACGTCCAAATGGGGGCTTAGATGAGAAACTTCACGATCGATGCCTTGATTTC GCCATTCCCAGATACCCATTTCATCTTCAGATTGGTCTGAGATTATGCGAAAATATACAC TCATATACATAAATACTGACAGTTTGAGCTACCAATTCAGTGTAGCCCATTACCTTACAT AATTCACTCAAATGCTATGGGATCCTCCCTATAGTGAGTCGT |
| GenBank Accession | FR801819 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:21767901 - go to primer design |
| BLAST e Value | 0.37 |
| Hit Clone Code (BAC ID) | MNC6 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
| Other FSTs Supporting this Hit | FR801819 [GenBank] |
Gene hit MQN23
| Sequence (A. th genome BLAST matches underlined) | >33-K012479-022-055-A05-8409 TGATCCATGTAGATTTCCCGGACATGTAGATTGAATGGAAACCTTGTGTTCGAGAAAAAA ATTTATAATATCATTCGGTGGGATTTAAGCAATTGGCTATCGTATTACCTTTAGAATATG AACATAATATATGAACTTCTACACATCAATCTTTAATTAACCACAACCAAAAAGAAAAGA AAAAAATTTAATCCAAAGAGACATAAAAAACCTTGGTAAAATTTTATAATCATTAATGTA GTATTAGTTACCACTTATCCCTTTATCGATTTTAGATATAATAAGTGATGATAAAAAATT GACAATCCAACGCAATATGATCAAGTCGATTCATCCCCTCATTAACAATCAAATTATTTA TATAAGGCTTATCCTGTAAATTTTAAGTACTGGCAAATGTTTCCACAATGTTATTTACTA TTTCTGTTGTTATTGTAATTTATCTTTTTCATATCCCTATATCCCGAAAAGGAAAATTGT AGTATATGCTTTTTGTTATCGACTTATCTTGATGAGTCATCTCTAAGCTCCATATCTTTC TTTCTTCTTTTTTTTATCAACGAGCTCCCATATCTTCAAAGAACCTTATTACATTATTAA TATCTCAGAAGGAAGATTTAACCATAGTAGTTTGAAAAATTGGGGTTGGATATAATTAAG GAGCCTATGGG |
| GenBank Accession | AL754630 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr5:26028320 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | MQN23 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
| Other FSTs Supporting this Hit | AL754628 [GenBank] |
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Last Updated on 10.06.2021 13:37 |
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