SimpleSearch - Line and FST details
Line specific information
| Line ID | 055B03 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N405199) |
| Segregation Analysis | 50:42:35 |
| Confirmed for Hit | At5g52605 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 12806 |
Gene hit At5g52605
| Sequence (A. th genome BLAST matches underlined) | >18-K012479-022-055-B03-8409 NTGATCCATGGTAGATTTCCCGGACATGAANGCCTTTACAATTGAATATGATGAGTTTAC ATCTTACCTTTGCCGCCCATGACTCTTACGAGACACCTGTCGGTCTAACCATTCTTCTCT TTTTTCTTTGTTAAATCAAACATATAGCAATTTTTTGATATTTTTGTATTTGAACGATAA TGAACAAGGAGTTGTTGCGTATTTATAATTAGAATTCTAACTATACTCAAGGGATCCTTC GAACTAACGTTATCTCACATAATAGATTTGACACGACTACACTATATTGGGTCAACCACC TTACAACCATGTTTCCAAAGAGATTGGATATTCCAACTTTGACTACGTTATTACAAGACA TACATGACTTATTTACATAAACGTGTTTGGCAGTTTGCAAGGTAATGCAGACTAATATTT TCTGTGGGATTATTCTGTCAAGAGATATGACTACAGACTCATTCATTTCTCAATATTCCA ATTCACTATGGGATCCT |
| GenBank Accession | AL754662 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:21345547 - go to primer design |
| BLAST e Value | 9e-144 |
| Hit Clone Code (BAC ID) | F6N7 |
| Hit Gene Code | At5g52605 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Defensin-like (DEFL) family protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At3g60164
| Sequence (A. th genome BLAST matches underlined) | >18-K012296-022-055-B03-35St TGACGTAAGGGATGACGCACAATCCCCTATCCTTCGCAGACCCTTCCTCTATATAAGGAA GTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCGCCTTCG GTTTAAACTATCAGTGTTTGAAAATCTTGGGCCTGCCTTTGTATAAGTGAACAAGTCAGA TATCACATGAAGGCCCATTAACTTTAGGGAGAATTAAGAAACAGAGAGAATTCGAAGCTA TGGGATCCTCCCTATAGTGAGTCGTATTACTCAGNGCTTGGCNTTCCGTGCGATAATGAC TTCTGTTCAACCACCCAAACGTCGGAAAGCCTGACGACGGAGCAGCATTCCAAAAAGATC CCTTGGCTCGTCTGGGTCGGCTATGGGATCCTCCCTATAGTGAGTCGTCTTACTGACGNT CACGGTAGCGGGCTCCCACTGGCGGGCGATCTTCCCCCTGCGCTGTTATACGACAGCCGG GATACGGACCTCTCGAGCACCCCCTTTTCTAAAACCACCTTGCCCTACACCACCTTACTT ACCAAAAAAAGCTGGGGACCTGCGCCTTGCCTTGGCCGTTTCCTGGGCGTCGGCCTTGAC TCCGCCGGTAGCAAAATCCCTTTCACAC |
| GenBank Accession | AL754660 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:22231929 - go to primer design |
| BLAST e Value | 1e-47 |
| Hit Clone Code (BAC ID) | T2O9 |
| Hit Gene Code | At3g60164 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | |
| Insertion Classification | 3' region |
| Confirmation Status | unknown |
| Other FSTs Supporting this Hit | AL754660 [GenBank] |
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Last Updated on 10.06.2021 13:37 |
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