SimpleSearch - Line and FST details
Line specific information
| Line ID | 055B11 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N405207) |
| Segregation Analysis | 100:86:57 |
| Confirmed for Hit | At4g26160 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 9535 |
Gene hit At4g26160
| Sequence (A. th genome BLAST matches underlined) | >82-K012426-022-055-B11-8409 NTGATCCATGGTAGATTTCCCGGACATGAAGCACTTTACATGTGAATTGGCGGTGAAACC TAGGAGAAAAGAGCGTTTCTTAGAATAATCGGCTATTTAAAGGCCGTGAAAAGGTGTATC CGGCCGTCCATTTGTATGTGCATGCCAACCACAGGGTTCCCCTCTGGAGTGCTTGGCATT CCGTGCGATAATGACTTCTGTTCAACCACCCAAACGTCGGAAAGCCTGACGACGGATCAA CATTCCAAAAAGATCCCTTGGCTCGTCTGGGTCGGCTATGGGATCCTCCCTATAGTGAGT CACTTNTACTAAAAATCTGCTTAATTCTTATGTCACTTGTAGTCGATTGGGAAATTAGGG ATTTCTATATGTGCCATTGATTGTGATTACTCTTTATGTGGTCTTTTTGGTCCATTAGAA GATGTTTTAAGTTAGGTCTCTCAGCCACATAGACGATTACATTAGCCCTGTGTTTAAGTT CACACTGTCTTACTTTGATTGAAGCTATGGGATCCTCCCTATAGTGAGTCGTGTTTACTC AGTATCGGCAATCTTTATATGAGAGATCTGTTATAGATCACTGTCCTGAATCTTTCGACC CCAGGGTCATTTGGCGGCATCCTCTAAAGCATGCCGTACTCCACTGGTGTCCGTTTCATT ACGAAAAGTGAACACTTAATATAAAGAATTCTCGTTGACCGTTTTTTTGGTATTCCTAAA CTTCACAAACACGAGTCGTTGGTCCCTACGAGAACCCCCCTTTGTTGGACGGGCGGTGCT TTCTAACCTTGGTCCTCACCCAAGGAGGAAACCTNGCCCCCACCTAATACCCCTGCTCCG AGAACCGGGGCTGCGGCACACTCCTGCGCCAATACGGTCCGACCCCCTGACATAATAGCC TTCTCATCCTTACTCATAAAGAA |
| GenBank Accession | BX572134 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr4:13255593 - go to primer design |
| BLAST e Value | 2e-101 |
| Hit Clone Code (BAC ID) | F20B18 |
| Hit Gene Code | At4g26160 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | atypical CYS HIS rich thioredoxin 1 |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | BX572133 [GenBank] BX572133 [GenBank] BX572132 [GenBank] BX572132 [GenBank] |
Gene hit At3g05220
| Sequence (A. th genome BLAST matches underlined) | >82-K012479-022-055-B11-8409 TGATCCATGTAGATTTCCCGGACATGAAGCACTTACATGTGAATATATCCTGTCCGGCAT GATTATGATGATGATGTTTCAAAAGTCAGATATTCCAAAAGACTGTGGAGAGATCTTTGC GAACTATCCATTGAGGTGCACCCACATCACTCTTGGAAAGGTTAAATAGTGGTATGATTC CCGAACTACTACACTTGTTTTCACTACTGGCATCCTCCCTATAGCCAGACCACGGATCAT CATTCCAAAAAGATCCCTTGGCTCGTCTGGGTCGCCTAGAAGGTCGAGTGGGCTGCTGCG GCTTGATCCCTCAACGCGGACGCGGACGTAACGCAGCGCCGAAAAATCCTCGATCGCAAA TCCGACGCTGTCGAAAAGCGTGATCTGCTTGTCGCTCTTTCGGCCGACGTCCTGGCCAGT CATCACGCGCCAAAGTTCCGTCACAGGATGATCTGGCGCGAGTTGCTGGATCTCGCCTTC AATCCGGGTCTGTGGCGGGAACTCCACGAAAATATCCGAACGCAGCAAGATATCGCGGTG CATCTCGGTCTTGCCTGGGCAGTCGCCGCCGACGCCGTTGATGTGGACGCCGGGCCCGAT CATATTGCCGCTCAGGATCGGGGCGTTGTGCCTTGCCGGCGTTGCTGGCGTAATGATATC GGCACCTTCCACCGGCTGTTTCCGCAAAGTGCCGGCCCTCGATCTGAAACCCGAACCCGC TGAAAATTGCGGAGCCACCGAACCAGTACCCTCGGGGTCCAATGTCCTAAATCCCATCCG ATCCACCCCCTTTGGGCCCTTCAAGGCCCAAGCCTGGGCCTCCCTTTGGGCCCCCGTCGG CCGACAACCCCCTCGTGCCCAAAATTTTACGGCCCACATACTTTGCC |
| GenBank Accession | FR801835 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:1491542 - go to primer design |
| BLAST e Value | 2e-06 |
| Hit Clone Code (BAC ID) | T12H1 |
| Hit Gene Code | At3g05220 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Heavy metal transport/detoxification superfamily protein |
| Insertion Classification | TS2TE (3') |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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