SimpleSearch - Line and FST details
Line specific information
| Line ID | 055C11 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N405219) |
| Segregation Analysis | 50:46:43 |
| Confirmed for Hit | At4g24974 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 68210, 96966, 96967, 96978 |
Gene hit AP22
| Sequence (A. th genome BLAST matches underlined) | >83-K012470-022-055-C11-8409 NTGATCCATGTAGATTNTCCCGGACATGAANGCCTTTACAATTGAATATATCCTGACAAT ATGGAAATATACATATTGCTTTTAAAAATAGTAAGTGCAACAAAAAGACTACATAGAAGT CAATAAAAAATAGCCGAAAGTTTTTGTGTTATGAACTAAAGTTTTTTGATAAGTTATTTT CAATATTTTACACTGTTTGTTACATGTCATTGTCTTCTGTGTGTTGATTGATACGTGTGG TTATTATATAAACGAACGATTGGTCCAATATCCAAATTTTGGTTAAGATGCAAATTGTGT CGGTGAAAATAATGTAGACATTGTACTCGTTGACAGCGACTTCTATGGGATCCTCC |
| GenBank Accession | AL754711 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr4:17539440 - go to primer design |
| BLAST e Value | 9e-150 |
| Hit Clone Code (BAC ID) | AP22 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
| Other FSTs Supporting this Hit | FR801851 [GenBank] |
Gene hit At4g24974
| Sequence (A. th genome BLAST matches underlined) | >83-K012383-022-055-C11-35St NCCTACTGACGTAAGGGCTGACGCTCAATCCACTATACTTCGCAAGACCCTTCCTCTATA TAAGGAATTTCATTTCATTTGGAGAGGACAGGGCACCCGGGGATCAGATTGTCGTTTCCC GCCTTCGGTTTAAACTATCAGTGTTTGACGGCCTATTTGGAGAAATCCTGACACCATGAA CACCACATGAAAAATCTCTGACTTCAACTAAAATATAATCCATTTCGATCTGGGTGTACC ATTCATAATGACAAAAGAAAATAGTCACGGTCCAAAAACCAAGATATGCTCTAAACCCCC AGGGTGTGTCAGAAACTAAAGATAGCGATCCGAAATCTTTGTTCTTCGATCTGCAGTGCA ATCCTAATTGAACATTTGGACCAATATCATTGATGAGATCCACGTTAACCCCACGAGCCT GGCATAGACCACCAAACAAAAAAACCATGAATGTGACACTCTTTATGAAGGGAAATGCCA AAGAGCCACTCATTTTGAATATTATTTTTTGACAATAATGATGAATATGAACTTAAAGTT AGCGCATCCCATCTTTTTATACTCACTTCCCTTGTTCGGACTGATTAAGATATTCAAAGA TATGCAAAGATTCTTTACTCTTGGGTATATATTTTCCCTTTTTTTTGATAGAGGTGCTGA TATCAAATGTATTCATTTGACTTACAAACACACATGCTTTATGAACCAAGTCATAACCTT ATGGAATGCTCCTTAAAAGGAAAGCCCCAACCAAACAGGTGTTATTCCAAAACCTTCTTG TTATTGACACCTCCCCTTAAGAAAGCAAAAAAAAAACCCTTTTTGGGCAAGGTGCCAAAC CCTCCCCCTAAACATCTTACTTTTTTCCCCCGAAAGAGGGAACACACTTTCCCGCTTTTC TTTTAAGAGCTCAAAATAAACCATTTTTATATA |
| GenBank Accession | FR801850 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr4:12843226 - go to primer design |
| BLAST e Value | 4e-149 |
| Hit Clone Code (BAC ID) | F6I7 |
| Hit Gene Code | At4g24974 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Plant self-incompatibility protein S1 family |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At5g18980
| Sequence (A. th genome BLAST matches underlined) | >83-K012479-022-055-C11-8409 NTTGGATCCATGTAGACTTTCCCGGACATGAANGCCTTTACTTGTGAACTTTTTCGGTTT TGTTTAATCAATGGAGTAGTAGTTTTAACAATGGAATTTTCTAAAAATTATGTTTGTCTT TGTATAGGTCTCGGAGCTTCAAAAATTGGAGGAAGCTATAGGCTCAACCGACACCGTTTT TGATCTAAGAAGCAGTATCGAGAAAGGCGACAGCGGCGAAACCGCAGACGCAGCTTCTAT TTCCTCCGCGACCGCGTTTCGTAGAAAATCAACAGTCCCAGCTCCGGAGAAGAAGCTAAC GCTATTCGCTCTACAACTCGCGATTCTTGAGAAAACCGCCACTGGAATCGGAACCCTATG GGATCCTCCT |
| GenBank Accession | AL754712 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr5:6337726 - go to primer design |
| BLAST e Value | 5e-176 |
| Hit Clone Code (BAC ID) | T16G12 |
| Hit Gene Code | At5g18980 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | ARM repeat superfamily protein |
| Insertion Classification | CDSi |
| Confirmation Status | unknown |
| Other FSTs Supporting this Hit | FR801852 [GenBank] |
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Last Updated on 10.06.2021 13:37 |
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