SimpleSearch - Line and FST details


Line specific information

 
Line ID 055D01
Vector Used pAC161
Line Availability available as T3 set from NASC (N405221)
Segregation Analysis 50:46:43
Confirmed for Hit At1g61520
Parent of DUPLO pair none
Parent of pair(s) 1467, 2886, 3156

Gene hit At3g05710

 
Sequence (A. th genome BLAST matches underlined) 
>04-K012356-022-055-D01-8409
NTGATCCATGGTAGATTTCCCGGACATGAANGCCTTTACAATTGAATGTACACCGACACA
ATGAAGTGAGAAGATGCCTGTCTGCTGCTGTTGGATATCCACTCGCTCTACTGTGCTGGT
GACTCTTAATCATCTTAGAGACAATGCGGTCACCCACTAGAGATCCCTCACTAGTTGATT
CTTTTTAAACGCGAACACCACAATACTTGCGTTGACGAGCGCTCTAGACACAACATGAAC
TGGAGACAAATCCAAATGCGCCGTCTATGGTGGCTCAGGTGAGCTTGTACTGCCTCTCTT
TTCTGCTTTCTTTTTTATGGCTTGAGGCGTCTACATAGGAAAACAGCATCACTTTGGTAT
CGAGTTGCTGTAACACTGGCTTCACACGAGTGTGTAATGGATTTATTTACTGTAAAGAAT
ATATTATCCCTGATTATAAGAATCTGCGGAGAATATATCATATAGATCTGTA
GenBank Accession FR801856 [GenBank]
Graphic View Graphic view of gene At3g05710
Predicted Position of Insertion Chr3:1687132 - go to primer design
BLAST e Value 5e-28
Hit Clone Code (BAC ID) F18C1
Hit Gene Code At3g05710 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation syntaxin of plants 43
Insertion Classification CDSi
Confirmation Status unknown
Other FSTs Supporting this Hit FR801857 [GenBank] FR801858 [GenBank] FR801858 [GenBank] FR801856 [GenBank]

Gene hit At1g61520

 
Sequence (A. th genome BLAST matches underlined) 
>04-K012296-022-055-D01-35St
TGACGTAAGGGATGACGCACAATCCACTATCCTTCGAAGACCCTTCCTCTATATAAGGAA
GTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCGCCTTCG
GTTTAAACTATCAGGGTTTGAAATACTGATAGTGTCTTCATGTGCAAACCAAACACAGCG
GTTAGTATATACAAAGAATGTTATGAAATACTAGACCTAGTTATGCTTTACCAGTAGTCT
CATCTTATCACTCTGTATATGCCAGACCACCTTATACATTTAGAACGAACACTAAGTTAA
CACTACGCCATGCAGGTGCTATCATAGATAGGCGCTATCAATGGATTTGAAGACCTAACT
ATGATAGAAGTATTACCATCTTTCGTGTTATCTTTTAAGCCGGACCTCATTGATGACATG
CTTGACGAATGGTGCCATGATCTCCACCTTCACAGATACGCACTGCATCCATATAGTGCT
GTGACATCATGCGAAACCCTACGCGTATCTCCATAATACGTGCAGTTGGAGCCTACCAAT
CAGTGTACCCCATTACCTTACATAAGTCACTCAAATGCTA
GenBank Accession FR801854 [GenBank]
Graphic View Graphic view of gene At1g61520
Predicted Position of Insertion Chr1:22701316 - go to primer design
BLAST e Value 1e-47
Hit Clone Code (BAC ID) T25B24
Hit Gene Code At1g61520 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation PSI type III chlorophyll a/b-binding protein
Insertion Classification TS2TE (3')
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit AL754715 [GenBank] AL754715 [GenBank] FR801854 [GenBank]


Last Updated on 10.06.2021 13:37