SimpleSearch - Line and FST details
Line specific information
| Line ID | 055E09 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N405241) |
| Segregation Analysis | 100:93:84 |
| Confirmed for Hit | At2g29050 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 2752 |
Gene hit At2g29045
| Sequence (A. th genome BLAST matches underlined) | >69-K012453-022-055-E09-35St TGCGCTAAAAAACAGTGCAAATTGAAACTTAAAATTGTCCCGAGCATTCCCGTATATGGA GAAATTTTGACATGATAATAAATTTTTAAAAAGAACACACTATCTTCTGCTAATATAGTA ACATGACATGATAAATCTTTTACACTCTTTGATGACATATTTCTTTTTTGGACAATAATT ATTTTTCGGAAGGTCGCTCACCTAAAAATTATTCCAGCTCAAACACGTTTAACTTCAGAG TATTTTTGAGAACATTTGACCGAAAAGATAAATGCATTTTAGTGACACCCGAAAAGATAA ATGTATTTTAGTGACACCAATGACCAAATTGATTCTTTTAAAATTCTTCGCATGCATCAC TATATTCCTGAAACTGGAGTGTTATACCGGTGACATCTCTGGGGAAACATCAAGACTTTG GCCAGAGAATTAGTGGTGGAAAAAGGACAACCAATGGTAGAAGCAAAGAGAGGTTGAATC AGGGAGTTTGTGATTAACTGGAGTGAGATTAAGAAACTGAAACCTAACAATAATAAGGAA TCGATCAACAATGGTGATGGGTCATTGACTATTGGTTTCATATATTAGAGACGATGATGC TTTTTTTTTGGTAAAAAGACAATGATGCTTTCTGTTTTGGGTTTGTAATTAATTTCTACC CAAATAATTCTTTAAAAATCTTTAAAATTAAAAAAACAGATTTGTAAATCTTTTACATCC CTTAAAAATCTCTAATTAGCTCTCTAATTCCATTCATTCTTTGATTCAATTAGGTGCCTG AACAATTTTAGGGGCACTTGTCCGAGGAAATCTTGAATATTAACCATACCTCCTATGGAA TTATTTATCGCTTAATGGAAAAAAAAACAAATTTTTTATAAAACAT |
| GenBank Accession | AL754783 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr2:12476081 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | T9I4 |
| Hit Gene Code | At2g29045 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | low-molecular-weight cysteine-rich 62 |
| Insertion Classification | 5' region |
| Confirmation Status | unknown |
Gene hit At2g29050
| Sequence (A. th genome BLAST matches underlined) | >69-K012356-022-055-E09-8409 GTGATCCATTGTAGATTTCCCGGACATGAAGCACTTTACACTTGAATATATCCTGAAACT GAAAGACTTGCTTTTTATTTACTAATTCTCATTTTCTTTGACAGTACGCATTGGATTGCT TTATATGATATCTGGATTTGGTGGAAGTTTGTTATCTTCTCTATTTAACCGGGCTGGTAT ATCCGTTGGTGCCTCTGGAGCATTATTCGGCTTGCTTGGTGCTATGCTTTCAGAGCTTCT CACTAATTGGACTATTTACGCTAATAAGGTAGCCAAATCTTCCCTTGTTAAACAAGCCGC ACTTTCGATGAATGATGTGTCAATAATGTCATTGGTTTTTCTACATTTGCAGTTTGCAGC TCTTTTGACACTCATCTTCATCATAGCCATTAATTTAGCAGTAGGTATTCTTCCACATGT AGACAACTTTGCCCATCTTGGAGGATTCACATCAGGGTTTCTTCTATGGGATCCTCCCTA TAGTGAGTCGTATTA |
| GenBank Accession | BX572146 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr2:12479063 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | T9I4 |
| Hit Gene Code | At2g29050 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | RHOMBOID-like 1 |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
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Last Updated on 10.06.2021 13:37 |
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