SimpleSearch - Line and FST details
Line specific information
| Line ID | 055F01 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N405245) |
| Segregation Analysis | 50:45:31 |
| Confirmed for Hit | At1g80610 |
| Parent of DUPLO pair | 12469 |
| Parent of pair(s) | none |
Gene hit F21E1
| Sequence (A. th genome BLAST matches underlined) | >06-K012383-022-055-F01-35St NAATTGGACGTAAGAGACGACGCAATANCCACTATCCTATACGCAGACCCTTCCTCTATA TAAGGAAGTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCC GCCTTCGGTTTAAACTATCAGTGTTTGAATATGGTAATTATGAATTGTAATGATTTTCAT TTACAATTGATTTCCCGGACATTAATTTTTTGGCAATTAAGCATTAATAGATTAATATTT TAAGTAAAGATAATTATGAATAAATCCTTTTTATTAGATAATCCATAGAAAACATTCACT ATGGGATCCTCCCTATAGTGAATGNCNNGAAGAAAGCCTTGCAACGGATCATTTTTACAA AAAAGATCCATTGGGTTGGCTGGCTATACTAGGGTAAAGTTTTTTATGGGATTTACTATT CACCCGAATTATTATGCTTACGTTTGCTAACATTGTTGTTATTTAATGCCTTCTGGTCGA AAATTTGATGTCCGGGTTTATAACCGCTTAAGGCAATATTTCTAATGAAAACTCAATGTT AAACATTGACTCCATTAAGGGAAAGGGGATACAAACTTTGATCTCTTGGTCGCGTTTCTT TCCCCCCGAGCGGCACTCTCCTATATAAAAGAAATGCTTTGCGAAAGAATCATTGTGTAT ATTTTCATACTTATACTCGTGGGCATATTTAATCATTCCCTTGTCTATTGAACATGTTAT ATCA |
| GenBank Accession | AL754795 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:1115321 - go to primer design |
| BLAST e Value | 7e-52 |
| Hit Clone Code (BAC ID) | F21E1 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
Gene hit At1g80610
| Sequence (A. th genome BLAST matches underlined) | >06-K012479-022-055-F01-8409 TGATCCGTGTAGATTTCCCGGACATGAAGCACTTTACACTTGATATGACTCTTGCCTTAC ACCTTGACAGACCTATGGGATCCCTCACTGATGTGGATCACTATGGGATCCTCCCTATAG TGAGCAACCTCGCGTGTGGTTGTGGCAAATAAAATAGCAAAAGGCAAAGATCACCGAATT TATCACCTGTGGGTTTGAAACTCAAAAACAATCTAACAAGTGTCTCCAAGAACACAACAA AAGAAATCGAGATAGATAGATTGAGTTTCTTGAAAAAGAAAAGACTAGACACATCATTGC CTAAATTGGAGTTGTGTCCACGCTGGGGGTATTTCGGTCAACGAAAAGTCGGAGTACCTA CATGATCAGCTTAAGAACACGATCGTGGATCCTTAAGTGACCAAAATACCCACTATCTAC CAACTGATATGTCAAGGGCGTACGTCAGAGTAGATCACCCCTAACCAGAACAAAGACGCT CAAGATTACTTTTTTAAAAACTAATGTCATGACTGTGCTAAACGCCGCATCACGAGGGCT ATAGCACAAAACTATACCTACGAGATATGACCGTCGCTGTAGTTTCAAATCGGGTCAACC TATGAGATGATTGACATGATTCGGACAAACCTTGAAATCGTAATGGCCTAGAAGGGTTTT ACGGGGGACTCTTATGGAATTCTCCTTTATTGAAATTCCCAACACCACATATCTAAGGAG CTTCAAACGGTTTATTTCGGATCATCATTGGTTATTTGCCACCCCNCGGCCCGGACACTC TTATCTTTCCCTTTTGTTTTTCTTC |
| GenBank Accession | FR801877 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:30303074 - go to primer design |
| BLAST e Value | 5e-164 |
| Hit Clone Code (BAC ID) | F5I6 |
| Hit Gene Code | At1g80610 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | hypothetical protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | AL754794 [GenBank] AL754794 [GenBank] |
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Last Updated on 10.06.2021 13:37 |
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