SimpleSearch - Line and FST details
Line specific information
| Line ID | 055G11 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N405267) |
| Segregation Analysis | 50:46:43 |
| Confirmed for Hit | At4g29180 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 10733, 73367 |
Gene hit At4g29180
| Sequence (A. th genome BLAST matches underlined) | >87-K012426-022-055-G11-8409 TGATCCATGTAGATTTCCCGGACTGAAGCACTTACAAGTGAGGGTCTGTTTTTTTTAGGT GAATGTGGTTTTGTTATAAAAGCTGGCTACTATGGGATCCTCCCTATAGCGAGTCACATC CTCATACTACTACCCCATATCTTGCAAGCCAGATCGCTGATTTGGGGCTTCTAAGGGCTT CCCTGATGATGACTCTAGCCCCTCCGTACTGCGTGTCTGGGCACTACTGGCTATGTCGAT CCTGATTAAGTTTCCTTAACACATCACCACTTTTAATCTTTACCATTTTGGTCATGTTGG TCTCATCATAAACTGGTTTCAAAATAGGTACTACAACACGTTTAAGCTAAACGAGAAGAG CGACGTGTACAGCTTTGGGATCGTCCTCCTTGAACTCATAACCGGCAAGAGATCCATAAT GAAAACTGACGACGGAGAAAAAATGAACGTTGTTCACTACGTCGAGCCTTTCCTCAAAAT GGGAGACATAGATGGTGTCGTGGATCCACGGCTTCACGGCGACTTCTCCTCAAACTCGGC TTGGAAATTTGTGGAAGTGGCAATGTCTTGCGTCAGAGACAGAGGAACCAACAGACCAAA CACAAACCAGATCGTGTCTGACTTGAAACAGTGCTTANCTGCCGAGCTA |
| GenBank Accession | AL754869 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr4:14388766 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | F19B15 |
| Hit Gene Code | At4g29180 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | root hair specific 16 |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | AL754868 [GenBank] AL754869 [GenBank] |
Gene hit F27H5
| Sequence (A. th genome BLAST matches underlined) | >87-K012453-022-055-G11-35St TGACGTAAGGGATGACGCACAATCCCCTATCCTTCGAAGACCCTTCCTCTATATAAGGAA GTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCGCCTTCG GTTTAAACTATCAGTGCTGTTGAATTTAGAGAGCATGCTATAATTCTAAATGTTGATTCA TGAGAAATTTCCGGACGAGAAAGAAATATCATTTATGTACGAGGAGATGACCAGAAACAT GGTGTGCTCTTGAGTCTGTACCCTTGTAATGACAACATATCTCTTAATACTGACCACCTA CTTTATTCATACCACCCTGAATATTTTCCACGTCACTCATTTATTACCTTTCCAAATAAA CTTTGTACACTTGATTGGGCACTACTTTACGTGTATTGCACTCTAAGCATGTTCTTATTT TATTAATCTACAACTAAAAA |
| GenBank Accession | FR801898 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr3:22257768 - go to primer design |
| BLAST e Value | 5e-62 |
| Hit Clone Code (BAC ID) | F27H5 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
Gene hit At1g61310
| Sequence (A. th genome BLAST matches underlined) | >87-K012479-022-055-G11-8409 TTGATCCATGTAGATTTCCCGGACTGAAGCACTTACAAGTGTGGTTCTGTTTTTTTTAGG TAATGTGGTTTTGTTATAAAATCTGGTTACTATGGCATCCTCCCTATAAGGATCAGGAAA CGGGTTTATGACTACCACATATTAAGCATCGTGACCAAAATTTAGTGGTCTAAGCAAATT GATTAAGTTCCTAATCCTATGGGATCCTCCCTATAGATGAAACAAAAATAGGATTCCTAT GGGATCCTCCCTATAGTGANNNNNNNNNNNNNNNNNNNNNNNNN |
| GenBank Accession | AL754871 [GenBank] |
| Graphic View |
|
| Predicted Position of Insertion | Chr1:22616441 - go to primer design |
| BLAST e Value | 9e-39 |
| Hit Clone Code (BAC ID) | T1F9 |
| Hit Gene Code | At1g61310 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | LRR and NB-ARC domains-containing disease resistance protein |
| Insertion Classification | Promoter |
| Confirmation Status | unknown |
|
Last Updated on 10.06.2021 13:37 |
gabi-kat.de 
