SimpleSearch - Line and FST details
Line specific information
| Line ID | 055H02 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N405270) |
| Segregation Analysis | 100:99:73 |
| Confirmed for Hit | At2g31220 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 93479, 93480 |
Gene hit At2g31220
| Sequence (A. th genome BLAST matches underlined) | >16-K012479-022-055-H02-8409 NTGATCCATGTAGAATTTCCCGGACATGAANGCCTGTAGAAACGATCATTGAAGTGAACT CGTCTCTCACGTTCTGTAGGGGAAGTTCTCGACTTTCTTGATCCTCTTCCTTTACGAGTA ACTCCATTGTTAAACTCAAGAATCTCATTCTCAAATCCACCATTGTTGTTGTTTGCTCCT TCAAAGTACAAAACATTCATTCCTCCATTAGCATCCATCTGAATTTGATCTTCAACTCCA AGTAAACAAGAGCCGTTTCTTAGCTGGTTCTGATCACTATGGGATCCTCCCTATTAGTGA NCAGAACCAGACGTGGGACATTCACGAGCACGAACAGAGCTACAGACTGCTCTCGTGGAT GATAGGAAGATCAAGGAGAAGAATGATACTCTGTGAATTACAAGCGCCACATAGAAGTAT ACCATTCTTGCTACAACAAGAACAACAACAACTCACTGACATGTTCATGGCTTACGAGGA ACTCGATAGTCACTGCTGTCGATGTACGTATAATCGATGATGAAGCGACCATCAAGCTTG TTCACATGACGAACATTATCTGTCAGTTGATCACCAACCCAGCTCTTGATCAACTTCGGC TAAATCTTCAACATGCTGCAGGTGGACACATTGGGGAACATTACAGCTTCTGGTCCCACA CTAACGGAATGAAAATGCCGCACTAAAATAGTTC |
| GenBank Accession | AL754883 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr2:13303898 - go to primer design |
| BLAST e Value | 8e-132 |
| Hit Clone Code (BAC ID) | F16D14 |
| Hit Gene Code | At2g31220 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | basic helix-loop-helix (bHLH) DNA-binding superfamily protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | FR801902 [GenBank] AL754880 [GenBank] AL754880 [GenBank] AL754879 [GenBank] |
Gene hit At4g38690
| Sequence (A. th genome BLAST matches underlined) | >16-K012453-022-055-H02-35St NTTTTGACGTAAGGGATGACGCATANTCCCCTATCCTTCGCAGACCCTTCCTCTATATGA GGAACTTTCTTTATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCGCCT TCGGTTTAAACTATCAGTGTTTAAACGCCTTCACATGTTCTTTCCTGCGTTAAAAAACAA TCATAACGACTTATGACTAAAGGTTTATTGATCAAGAAGGCGTGGAACATTTTATAAACT AGAGAGAACATACTTCACTATAGTGATCCCAGAAGAGAGAGCAAAGGGAAAGGGTTAATC CTCATCAATGGGCTCTCACCTTTCCAAACAACTCGAGCGGCGAAAAGCCATCTCCACGGA GAACAAAGCCCTCACCGATCTCGAGAAATCGAGCGGCTGCGAGTTTCCGGGGTGTGATTA CATGCCTTCCGATCGTAAAAACTGGATGGCCGGCGTTGGACCTGAAAAGCTTCACATCAA CAAGATCGTCTGGCCTGGGACGCACGACTCTGCCACCAACAAAATCGGTATCCGATTCGT GTCTCGTCCCTTTGCTAAGTGCCAATCTCTCTCCATCTATAACCCACTCGTGGCGGGTCC TCGAGGTCCTTGACATTCCGGTCCCAAAAAAATCCCCGTGTATGCCACGGTATCCTTAAA ACTTATAGTGCCGACGTT |
| GenBank Accession | AL754881 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr4:18075836 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | F20M13 |
| Hit Gene Code | At4g38690 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | PLC-like phosphodiesterases superfamily protein |
| Insertion Classification | TS2TE (5') |
| Confirmation Status | unknown |
| Other FSTs Supporting this Hit | AL754878 [GenBank] |
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Last Updated on 10.06.2021 13:37 |
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