SimpleSearch - Line and FST details
Line specific information
| Line ID | 055H09 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N405277) |
| Segregation Analysis | 50:47:36 |
| Confirmed for Hit | At4g38390 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 3633, 3721, 93674 |
Gene hit At4g38390
| Sequence (A. th genome BLAST matches underlined) | >72-K012479-022-055-H09-8409 NTGATCCATGTAGAATTTCCCGGACATGAAGCACTTTACAATTGAAATTGACTTAAATTG AAATGGTGGCACGGTACGGATACGAGAAGCCAAACCAATCGGAATTTACTGATCGCAACA AGCGGAGGGTTAAACCTCAGCGGACAGGGGTGAGTACCTCCTTGAGAGATATGATGCTTC TTCAAGTGGTTAATTCATATATATATTTCTGATTAAATTCGGTTTCTACTGCAGATAATA CATGCTGAAGTATCGGCATACATTCTAAACGCCACTCTTGTGGACCCTAACCTTGACCAC AAGTCCTACTGGAAGGACCCATNGTCCCTGCCCTGTCCCTCTCTGTTCCCATTTTAAAAA TTTGTTGGTTCGAAGTTCTAACACACAGGTTTTGTTTTGAATTGTTTTGTGGTACGCAGC AACTTTGAGGATATATTTGATGTTGATTGGTTCATATCGCATCTCTCCAAAGACGTGAAG ATCATCAAGGAGCTTCCTAAAGAAGAGCAGTCAAGAATATCCACCAGCCTACAGTCAATG CGTGTCCCAAGGAAGTGCACGCCTTCTTGCTACTTGCAGCGTGTTTTGCCCATTCTTACT AAGAAACATGTCAGTTCTCCTCTTCCAAACTATATCTATCATGATTGTACATATGCTCAT CTTTTTCTAAATGTTGCAGGTTGTACCACTCTCCAAATNCGATTACAGGCTGTCCAACGC TCTTGATACAGAGCTCCAGAAACTGCCGTGTAAAGTCAACTACCATGCCGTCAGGTATAC AGAGTCTATCAACANGATGGGCCCCATTGNTTGTTGACCCGGATGAAAAAAAAGGCCAAA CATTTTGTTGCCCTTNCATCTCAGTCACACATACCAATTATATCTTATATGTAATACATT TT |
| GenBank Accession | AL754913 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr4:17976527 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | F22I13 |
| Hit Gene Code | At4g38390 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | root hair specific 17 |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | AL754913 [GenBank] |
Gene hit At5g13480
| Sequence (A. th genome BLAST matches underlined) | >72-K012426-022-055-H09-8409 NTGATCCATGGTAGATTTCCCGGACATGAAGCACTTTACAATTGAATATATCCTACCCTA TCATTAGACACATATGTTCAGGCTGAACTATGTATTGCGAGTAGGAAATAACGGATGAGT TTGTTTATTAAACCCATCCGACGGGCTTCCGGTTGATCAACACGCTCGAGGAGTGTATCT TAAGCAACTAACCGCGAGATGGCGTGAAAAAGATCTGAAGAACTGTTGAGATCAACGAGA TTCTATGGGATCCTCCCTATAGTGAGTCGATGTACTCAGGCAGGCGCGCAACACGATCGC AGAGTATTTGAACGCACGTACAATCGAGCCGACTTTCACGGTACCGGGCCCCCCCTCGAG GTCGATCCAACCCCTCCGCTGCTATAGTGCAGTCGGCTTCTGACGTTCAGTGCAGCCGTC TTCTGAAAACGACATGTCGCACAAGTCCTAAGTTACGCGACAGGCTGCCGCCCTGCCCTT TTCCTGGCGTTTTCTTGTCGCGTGTTTTAGTCGCATAAAGTACAATACTTGCGACTATGG GATCCTCCCTATAGTGAGTCGTTTTAC |
| GenBank Accession | AL754912 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr5:4331947 - go to primer design |
| BLAST e Value | 2e-89 |
| Hit Clone Code (BAC ID) | T6I14 |
| Hit Gene Code | At5g13480 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Transducin/WD40 repeat-like superfamily protein |
| Insertion Classification | Promoter |
| Confirmation Status | unknown |
|
Last Updated on 10.06.2021 13:37 |
gabi-kat.de 
