SimpleSearch - Line and FST details
Line specific information
| Line ID | 057C03 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N405403) |
| Segregation Analysis | 50:49:37 |
| Confirmed for Hit | At1g16220 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 987, 8352, 8379, 9897, 61245 |
| Note |
Gene hit At4g05230
| Sequence (A. th genome BLAST matches underlined) | >19-K016085-022-057-C03-8409 TCACACTATGGCTTCCACGCATTCTGGAGATATCTATATTCAATATTGGTGGGGATGGGT TTAATGTGTATTTATAATTCTTGGATAACTTCACACAATGAGGTCCATGACCCTATGGGA TCCTCCCCTATAGAGAGATCATTTGGGTCCCCTTGATCACCCCGGGGCCCCCGGAATGAC CGGTTTCCATCCATTACATTCGGTTTATAAATAAAAAAATACCCTTCTTGAGGCAAACTT ACCTGAACCCTCTGTTGAATCTTACCCAACTTTTTCCTCAGTTCTCCAACATTATCCCCT GCGTTCCCGTCCACCGGAATCTTCCTATGG |
| GenBank Accession | AL936586 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr4:2687838 - go to primer design |
| BLAST e Value | 1e-44 |
| Hit Clone Code (BAC ID) | C17L7 |
| Hit Gene Code | At4g05230 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Ubiquitin-like superfamily protein |
| Insertion Classification | 3' region |
| Confirmation Status | failed, line belongs to a contamination group, please check line 057C02 |
Gene hit At1g16220
| Sequence (A. th genome BLAST matches underlined) | >06-K115120-0022-057-C03C-8409 TTTTCTCAGGCGTCTTTTCTTCTTTATCTCCAAACCGGTACAGTCTCATTTGTTTCTGTT GAAGCCTCTTCCTTCTTGTCGGCATCTTTGCTTGATGTTATGGTGACACTCTCTGTAGAC TCTTCATGAGAATGATTAACGGTTTCCGAAACTTCCACGGTTCCTCCTGCTGAAGTGTCT TCAAGAAAGAGACATACTACAGCACAATCATCATTCTTGGAAGTAGGATACTTAAGCCTC CATGCTCGAACCGCCGTGTCGACTACAGCACGAGCTGCAGTATCTCGACTAGGAGCTGAA GCCACAATATCAACAGCTTCTTTGTTCGACAAAACATCCCATACCTAGCATTAGAGACAC TTTAGCTCCAAAGATTTCGATAGTAACCAGTGAGAAGAATAAGAAGAGTAATGTGTACCC CGTCAGTAGCTAGAATAATATACTGATCTCTTTCAGTGAGTCTATGGTAGTTGATATCCG GGACAGAGATTAGACCATAATCTTTAAGGCAGAAGTCCCCAAAAGCTCGAGCCATTGCTA AACCAGGTGAATCGCTGTTCGGTAACCACACACGCGCAACCTCAGGCTCGTCTTGTAAGG CAAACACTCTACCTTTACATCTATGGATTCTTGCTGATCAACCTAAAG |
| GenBank Accession | HE664198 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:5550386 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | F3O9 |
| Hit Gene Code | At1g16220 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Protein phosphatase 2C family protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At5g02540
| Sequence (A. th genome BLAST matches underlined) | >19-K016084-022-057-C03-8409 TGTCTTTCTTAAAGTTTAGAGACCTTAACACAACTTATTTAGAAATAGACATGCTTAAGT TGACAACAGCGAGTTTATTTTCTATATCGAAGAAAAATACGAACTTTTTCTTAATTAGAT TTCGAATGCATGCACTATCGAGAATCGACCGTCACAAGAAAAAACTAATATACATACTGT ACATATCTATATTCAATATTGGTGGGGATGGGTTTAATGTGTATTTATAATTCATGGATA AATTCACACAATAAGGTCCATGAAACTATGATATCCTCCCTACTGCGTGGAACATGCATA CACAAAAGATTAAAGCAACCCATGCCGTGGAAAACTATCTTTGGTATATTGAAGTTCTTG GCGATTATGCTTGTATAAGGCAAACACCAATCAGAAATTAGACAGCTATGGGATCCTCCC TAATAGTGAGAGGAATGGTATCAGATCATGACANAGTGGCCGAGAATATCAATCTATGGG ATCCTC |
| GenBank Accession | AL936585 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:568194 - go to primer design |
| BLAST e Value | 1e-139 |
| Hit Clone Code (BAC ID) | T22P11 |
| Hit Gene Code | At5g02540 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | NAD(P)-binding Rossmann-fold superfamily protein |
| Insertion Classification | Promoter |
| Confirmation Status | unknown |
|
Last Updated on 10.06.2021 13:37 |
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