SimpleSearch - Line and FST details


Line specific information

 
Line ID 057F11
Vector Used pAC161
Line Availability available as T3 set from NASC (N405447)
Segregation Analysis 50:48:38
Confirmed for Hit At1g53300
Parent of DUPLO pair none
Parent of pair(s) 63540, 94752, 94753

Gene hit F12M16

 
Sequence (A. th genome BLAST matches underlined) 
>86-K016084-022-057-F11-8409
ATGTTATATGAGCGTAGACGTCACTTCCCTAAGCCGCGAGTGGGGCTCTTAGGATGCCGT
ACTCTCCTTAGGGATCACTACCGCAAGAGCCAAGTAAATGGCTTCTTGCATATTGGATGG
ACCCCCACAACGACAAAACTCCAACTGTACCGAAAGCGAACCAACCAGATTTTTTTAAGT
ATAGTTATTTACAAATTACAAATTAACAATTATTTTCTTAAACCTTTTTTTTTTGTGGAA
TTTTTGGCCAACACCTTTTAATTCCTTTGATTCAACAATAAAGCCAAGTTTGGGAGAGAA
AAAAAAAAGCGAAATCCAAAACTCTTGCCCCGGGAACCGCCTTTGGACCAAAACCGGTTT
TTTTTTGACAAACCTTTATGTATATTCCCTTTCCGAAAATTTCTTTTCCATTTTTTTAAG
GTTTTTACCCAAAAAGGAAGTTTAAAAAAAATTTTATCCCAAAAAAAAAAAAAATTTTGG
TAATTTGGAACTGGGGTGGAAAATTTGAAACTAATTTTAAAAATTTGGTAAAGGCCATTC
CGGTAATTTTTTTCCTTCCCCTTGGCAGG
GenBank Accession AL936650 [GenBank]
Graphic View Graphic view of sequence AL936650 of line 057F11
Predicted Position of Insertion Chr1:19878711 - go to primer design
BLAST e Value 1e-19
Hit Clone Code (BAC ID) F12M16
Insertion Classification Genome Hit
Confirmation Status unknown

Gene hit At1g53300

 
Sequence (A. th genome BLAST matches underlined) 
>86-K016085-022-057-F11-8409
TGTCCTGTAGATTTCCCGGACATGAAGCCATTTACAATTGAATACAATTGCTCTATCATA
CAACTTCAAAGCCTCATTAAACAAACCTTTCCTATACATTTCATTCCCTACTCTCTTCAC
TTCCTCTGAATCCGAACCTAAAATCGCTTTTTTCCATATAGGAGTCTCTCCCGTAGCAAC
AGTACTACTACTTCTACTATGGGATCCCCCCTATAGTGAGAAGTAGGATCCTGATCCGGT
GTTGGTGGGTCTGGTCGGAGATATACCAGCTGCTCGCATGAAACCTCCGTGACAATAAGC
TCCAGTACGCAGAACAAGAACGTCGCTTCTTGAACGGATTTGAGTCACGGAATTGACTTG
GATATTCCCAGAAGGGCAAATGTTTGCGGGCGGGAAATAGATGACGCCGGAGACGTCGGA
GCTGGGGAAGTAGCACAGGACGAGGAGGGGGAGATAAGTGGTTGTGGATGAGAAGAGGAA
AACGTTGTA
GenBank Accession AL936651 [GenBank]
Graphic View Graphic view of gene At1g53300
Predicted Position of Insertion Chr1:19880486 - go to primer design
BLAST e Value 8e-107
Hit Clone Code (BAC ID) F12M16
Hit Gene Code At1g53300 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation tetratricopetide-repeat thioredoxin-like 1
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37