SimpleSearch - Line and FST details


Line specific information

 
Line ID 057H05
Vector Used pAC161
Line Availability available as T3 set from NASC (N405465)
Segregation Analysis 50:48:26
Confirmed for Hit At2g30200
Parent of DUPLO pair none
Parent of pair(s) 3872, 80965, 80972, 80978, 80984, 80985, 80986, 80987

Gene hit At3g17090

 
Sequence (A. th genome BLAST matches underlined) 
>40-K016085-022-057-H05-8409
TGTCATGTTGATTTCCCGGACATGAAGCCATTTACAATTGAATATATCCTGCACCCTAAT
GATTCGTTTCTCATTTTTGCATCTGATGGTCTTTGGGAGCATTTGACTAACGAAAAAGCA
GTTGAGATTGTTCATAACCATCCCCGTGCTGTAAGTTTCTACTTTGATTTCTCTCTTAAA
TGGCGTTTTTGGCCTATGGGATCCTCCCTATAGTGAGATGAAAAATAAAAATTTTATCCC
TTTTTTTTACGGCGCAAAAAGGCTATGGGCCCCTCCCTATTAAAAGANNNNNNNNNCNNN
NNCNNNNNNCGNNNGNGGNNCNNNNTTCCCCGTCGCCCCGCCCCGCAATCCGTTCGACCT
CCGCCGCCCGGCCCCCCCCGTTGTCTCCCCCCCACTGTCCCCTCCTTGACTCCCGCCGCC
CCCCCCCCCCCGTGTCCCGCCCCTTTCTCGTGCCCCCCCGGGGGCCCGCGCCCCTCCGCT
TTGTGCGTTCCTTCCCGCGCGCTGTTTCATCGCGATTAATCCCCATCCCCCCCCACCCCC
AAAAAAAGAGCTCCAACCCAAAAAAAAAACGCCTAAACCCTAATAATCACTAAATGGACC
CCATTAAACCAATCCCAGCACAACGACCTTAGGAACACCAAAGAATGACAAAAATA
GenBank Accession AL936668 [GenBank]
Graphic View Graphic view of gene At3g17090
Predicted Position of Insertion Chr3:5828845 - go to primer design
BLAST e Value 2e-73
Hit Clone Code (BAC ID) K14A17
Hit Gene Code At3g17090 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Protein phosphatase 2C family protein
Insertion Classification CDSi
Confirmation Status unknown

Gene hit At2g30200

 
Sequence (A. th genome BLAST matches underlined) 
>40-K016084-022-057-H05-8409
TATCATGAAATTTCCCGGACATGAAGCCATTTACATTGAATATATCCTGCATATCCATCA
TATCCATTCGAGTTTACGACATATAGAAGAATACCTTTACAAGTCCCATTTCGAAACTGC
TTTTACGATCCTTTGGATACGACAGCTTGACTGATGTCTCACATTGAACTGTCTATGACA
CCTGGAGTCAGCATCTACATCTTCTCCCTAATAGGGGCGCCAAAAGAGAAATAATTCACA
TAGTTCTCTGAGTATTGATTTATTACCTGGCGTGCAAGTATCTTCTTGATCGTGTCTGGA
TCTGCATGAGGCTGTGCATCGACATTCGAGATCACTGGGATCCTCGGACTTCTGATCTCT
GTGGCTGCCAATGCAGCTTCTAATCTCGAGACTGCTGGTTCCATGAAACTAGTGTGGAAA
GCACCTGCAACAGCTATGGGATCCTCCCTATAGTGAG
GenBank Accession AL936667 [GenBank]
Graphic View Graphic view of gene At2g30200
Predicted Position of Insertion Chr2:12883277 - go to primer design
BLAST e Value 4e-124
Hit Clone Code (BAC ID) T27E13
Hit Gene Code At2g30200 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation EMBRYO DEFECTIVE 3147
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37