SimpleSearch - Line and FST details


Line specific information

 
Line ID 057H08
Vector Used pAC161
Line Availability available as T3 set from NASC (N405468)
Segregation Analysis 50:44:43
Confirmed for Hit At1g13580 At3g22960
Parent of DUPLO pair none
Parent of pair(s) 142, 91842, 91844

Gene hit At1g13580

 
Sequence (A. th genome BLAST matches underlined) 
>64-K016084-022-057-H08-8409
ATTCCCGGACATGAGCTGCTGGCACTTGCTCATGAGGTATCTGAGCTCCCATATCTCCTC
TTGCGACGCATGGCCCCATCTGATGCTATGGGATCCTCCCTATAGACGAGATTTAATTGT
TTGCTTCAGCTAAAAGTATAGAAAAGGTTCACTAAGGAGAATGATTGTAGCTGAAAGTAT
CTATTTTTGATAAATGTGAAGAATGATTTATACCTTTTCTTATACTTTATAACAAATGTT
AAAGTTTGTGTGAATGAATGTAGGTCTTGTGATGTTGTTTGACACTTGATTGTGTTGCAT
TCTTTTCAATGTAGTGAGTACTTGACATTTGTTTAGCTCTATGGGATCCTCCCCTATAGT
GAGANGANNNNNAAANANNANTTACCNNTTTTTTTTCAATTCAAAAATGTAGATGTCCG
GenBank Accession AL936672 [GenBank]
Graphic View Graphic view of gene At1g13580
Predicted Position of Insertion Chr1:4646579 - go to primer design
BLAST e Value 4e-127
Hit Clone Code (BAC ID) F13B4
Hit Gene Code At1g13580 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation LAG1 longevity assurance-like protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At3g22960

 
Sequence (A. th genome BLAST matches underlined) 
>64-K016084-022-057-H08-8409
ATTCCCGGACATGAGCTGCTGGCACTTGCTCATGAGGTATCTGAGCTCCCATATCTCCTC
TTGCGACGCATGGCCCCATCTGATGCTATGGGATCCTCCCTATAGACGAGATTTAATTGT
TTGCTTCAGCTAAAAGTATAGAAAAGGTTCACTAAGGAGAATGATTGTAGCTGAAAGTAT
CTATTTTTGATAAATGTGAAGAATGATTTATACCTTTTCTTATACTTTATAACAAATGTT
AAAGTTTGTGTGAATGAATGTAGGTCTTGTGATGTTGTTTGACACTTGATTGTGTTGCAT
TCTTTTCAATGTAGTGAGTACTTGACATTTGTTTAGCTCTATGGGATCCTCCCCTATAGT
GAGANGANNNNNAAANANNANTTACCNNTTTTTTTTCAATTCAAAAATGTAGATGTCCG
GenBank Accession AL936672 [GenBank]
Graphic View Graphic view of gene At3g22960
Predicted Position of Insertion Chr3:8141055 - go to primer design
BLAST e Value 2e-21
Hit Clone Code (BAC ID) F5N5
Hit Gene Code At3g22960 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Pyruvate kinase family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37