SimpleSearch - Line and FST details


Line specific information

 
Line ID 057H09
Vector Used pAC161
Line Availability available as T3 set from NASC (N405469)
Segregation Analysis 100:100:99
Confirmed for Hit At4g02480 At2g38880
Parent of DUPLO pair 2295
Parent of pair(s) none

Gene hit At4g02480

 
Sequence (A. th genome BLAST matches underlined) 
>72-K016084-022-057-H09-8409
ATGTTACTCATAGCTACTAGTCTCTTGACTATGATATTCTGCTGTACATAAGACGTGATA
TACGCAACTTTACTCACATACCTCCCCGGATATCTATAAGAGATCATCCCTCTTTGGAGC
CCAGGGAAAAGTAGCCCTTGCATTTGAAGACAACTGTGCTTCAAAAATTGGGATTAGATT
CGATAGGCCTGTACAAGATGGCAATGATCTTGGTGGCCTCTGCGAAGAAGACCATGGTTT
TTTTTGTGCTGGTAATCGCGGGCTGTTTTTTTTCTTTCTAACTTTACTTAACTTAAAAAG
TGAACTTTATTAATATTATTCTTTGTGTGCAGCTATGGGATCC
GenBank Accession AL936673 [GenBank]
Graphic View Graphic view of gene At4g02480
Predicted Position of Insertion Chr4:1085616 - go to primer design
BLAST e Value 4e-90
Hit Clone Code (BAC ID) T14P8
Hit Gene Code At4g02480 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation AAA-type ATPase family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At2g38880

 
Sequence (A. th genome BLAST matches underlined) 
>01-K022051-022-057-H07C-8409
GTAGATTTCCCGGACATGAAGCCATTTACAATTGAATATATCCTGACTAATATGTTTCAT
GTCCATGGCATTTACTCTCTCTTTTGTGCTTTTGTTGTTAACATACATAATAAAATCAAA
ATGTTTCTTATTAAGTTGAGACTAATTCGGTTCTTTTCATTCCCTGGGATTGGTTGCTGA
CACACCACCTGCTGATGCAGTTGGAGGTAAATAAACCACATACTTATTTCTACTTTATAT
TCCATTCCAGTGTTGCCCATTGGCTTCTTACGTTTTGTTGTGAAATTATGATAGGGTGAT
AATAAGGGATCAGGAAAGAGTGGAGATGGATCAAATAGAGATGCTGGTGGCGGTGTTTCT
GGTGAAGAAATGCCGGTATGATTTTGACAAGTATAGATGATACCAATGCTATACAGCCTA
TATTGTACTTAGCTCTGACTTCATCATTTTGATTCAATCACAGAGCTGGTAAAAGAAGTT
GCAAGTAGTGATTAAGAACAATCGCCAAATG
GenBank Accession HG968673 [GenBank]
Graphic View Graphic view of gene At2g38880
Predicted Position of Insertion Chr2:16239916 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) T7F6
Hit Gene Code At2g38880 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation nuclear factor Y, subunit B1
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit AL936674 [GenBank]


Last Updated on 10.06.2021 13:37