SimpleSearch - Line and FST details
Line specific information
| Line ID | 058B11 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N405495) |
| Segregation Analysis | 50:48:33 |
| Confirmed for Hit | At5g18255 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 789, 2944, 96227 |
Gene hit At5g18255
| Sequence (A. th genome BLAST matches underlined) | >82-K016086-022-058-B11-8409 TGTCCTGAAATTTCCCGGACTGAAGCCATTTACATTGATTTATCGTTAGGGTTTCGGCCT TTTCGGGCCAATGAGCAACCCCAATATCCTTGGCTGGCGGCTCCGGTGACGGAAAGGTTT CGATTCCTTTTATCGTTAATTTCCCATTGTTTTCAGCGATGAAGACTGCTTGCTGCCTGA GCGCACGATTTTACTCGGCGCTGTGATGGCTATTGCGAGCTTTAACACCCACCCAACCAA ATATTTATGTGTTTTTGAAAATTTTAGATTTTGATTATTTAAGGTTTCTTCTTCTATGGG ATCCTCCCTATAGTGAGATCCCNTATTGCATTAATGGCATTTGTTCGAGCCGACTATATT TTCCACTATCTTCACAATCATGTGACAGATATCTGCTCAACGGAATCCAGGGAGGTTTCC GGATATTACCCTTTGTTGAAAAGACTCAATTAGACTATGGGATTGCTCACACTGTACCTT TGATATATTCGGAGATAACGAGCGTGTCTGGGTTCCCCCCTGATAACGAGAATTTTCTTT CTTGAAATAAANTCCTAAAACACTCTGAATTAACTGTTTCCCCCACCCTTACCGGCGAAT GCTGCTAACGCCTTCTATTTGAAATCTTTGACTCCATGGGCAATTGGGAGCTCCNCAAGC AAACCCCCACATAACATAAAAAGACAGACTGACAAAGACAGAGTTAAAT |
| GenBank Accession | AL936700 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:6035646 - go to primer design |
| BLAST e Value | 1e-145 |
| Hit Clone Code (BAC ID) | MRG7 |
| Hit Gene Code | At5g18255 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Natural antisense transcript overlaps with AT5G18260 |
| Insertion Classification | TS2TE |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At5g25090
| Sequence (A. th genome BLAST matches underlined) | >82-K016087-022-058-B11-8409 TTTCCCGGACTGAAGCCTTTACATTGATTTATCGCTAGGGATTCAGTCTTTTCGGTCAAT GCATCTTCCCCAATATCCTTGGCTGGGCTGCTCCCGTGGCGCGATAGGTTTCAAGTCCGT TTATCGACAATATCCCATTGCATATCTCCGAAGAGGACTGCTTGCTGTCTGACCGCGCGA TTTTGCTCAGCACTGAGAGGGCTATTGCGAGCTATATCACCCACCCACTCACTTCATCTA TGTGCTCTTGTCTATTTTCTAAATGATTATACTCTAGGTCATTCTCTCAAGAGAGAGACC TATAGCGAGAGAACCCCGGCATGTCTGCGATGAAGATCATGACTACTGACTCCACTATGT TCCGAAAACTGATGTTACTTCTGCAAAAGATGAAAACTAATGCGACGTGCCGGACTCGAA ATTTACGCTATAAAGTCGGCAATGCCTTCCCTACAGAACAGAACTGATAAGTTGATACTA TCCTGGATGGTCAAGACAGAAATGCTGCTGAGAACTTCACGATAATCGGCATATGAGTAA CGGATGCAATGTTCTACACGAACATGACTACAGATGCTGCTACTATTCTGCGTTTTGTAG CCTA |
| GenBank Accession | FR801935 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:8647167 - go to primer design |
| BLAST e Value | 5e-34 |
| Hit Clone Code (BAC ID) | T11H3 |
| Hit Gene Code | At5g25090 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | early nodulin-like protein 13 |
| Insertion Classification | CDSi |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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