SimpleSearch - Line and FST details
Line specific information
| Line ID | 058D02 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N405510) |
| Segregation Analysis | 50:50:50 |
| Confirmed for Hit | At5g25420 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | none |
Gene hit At5g25420
| Sequence (A. th genome BLAST matches underlined) | >12-K016087-022-058-D02-8409 TATCCTGAAATTTCCCGGACTGAAGCCATTTACATTGAATATTAACCTCCTGTCAGACAC TTTAAGCGTTCTCTTTCTCTCTTACTCTACTTTGATAACTTCTTTTTCTCCTTCTAACTT TGGTTCTTGACATTTGCAGGTGCATGACAAGGAGGCAAAATGAAAGGCCCCGATCCGGAC TGCCTAAAGTCCGGACGAGTTCTCTCGACCCAAGCCACTAAGTGACTCGGCCCTAACCGT TTATGAGGTTCTTTCCTATGGGATCCTCCCCTATAGTGAGAGAAGCTATTGAGGTTGCAA AATTGTATAAAGCTAAGTCCCGCAGAAGCTGCAATATATTAAATTTGATTTTGGTTTTAG TAAAAAGTATAATACATATATTTATAGGAAATGTAATCTTAACACTTATAGAAATTACAA GTGTGATGTGATGAAGCGACTTACACACAAAACACAAGACGATGCAATAAAGAGATGCCA TGATTGGTAATGGTATGGACGCAAAAAAAGCTCCAAATTTTCCTGCATTTTGACCAAAAT AAATAAGTTGCTAAACCAGTAAAAGATATTCATAACATCCTTTATACAATACAAATAGAA AGATATAGGTTAAACAAAAAAAATATACCAAAAATGGAGAGAAAAAGCTGGAATGCTGCT GATATTTGTATCCCCCTTCCAACTCCCACCTTAGTCATTGCTAAAAGTCCAACATTTTCT CTGAATATACAGTTACCCCCATATTCAAACTATATCATTAGCCCTTTATTACTA |
| GenBank Accession | AL936719 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:8838478 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | F18G18 |
| Hit Gene Code | At5g25420 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Xanthine/uracil/vitamin C permease |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit F1N21
| Sequence (A. th genome BLAST matches underlined) | >12-K016086-022-058-D02-8409 TATCATGAGATTTCCCGGACATGAAGCATTTACAATTGATATGCACCTATGGGATCCTCT CTACAGTAGAGATCTTTGCATTGTTTGTAAATAACTACATATTATTATCTTCGAAAATGA ATTTCACATTTCAACAAAATAAAATATTTTCATGTTTCTACATGCATGCTATGGGATCCT CCCTATAGTGAGACCTTTTTCCCCTGCTATGGGCTCCTCCTTAAAGGGAGTTTTCTAACA GACTTCCTCTACTATTTCGGGCGTGGATGGACGAAAAAACTTTATCTGCGCAATCCTGCC TTTAATACGTATTTTGGGTTGAACCAAGAAGCTTTGGTACAAGGGTAAAAAGAGGAAATT TCTACTATTTGGGTTCAAGAAAAATTGGTCATTGAGGTCCAAACAATTTAACATAAATTT GTTGGCCCTGAAAATTAATCTTTGGATCTATGAAGTTTTTAAGGCCACCTAAATTAAATA TCGAATACTTTTGACATTTTCACCTCTCTAAAAAAATTTAACGGTAACCATAGTTAAAGC GGATAAAAATGTTTATTGATTAACCTATTTTTATTTATCCTTAAAAATATACTCTATTG |
| GenBank Accession | AL936718 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:25203444 - go to primer design |
| BLAST e Value | 3e-94 |
| Hit Clone Code (BAC ID) | F1N21 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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